Gene detail

Detailed information of Ppa0G066940 in Paragorgia papillata

Genomic Location: Contig00080:221828...239922
NR annotation: XP_028399443.1, protein ERGIC-53-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TU32	Protein ERGIC-53 OS=Chlorocebus aethiops OX=9534 GN=LMAN1 PE=1 SV=1
P49257	Protein ERGIC-53 OS=Homo sapiens OX=9606 GN=LMAN1 PE=1 SV=2
Q62902	Protein ERGIC-53 OS=Rattus norvegicus OX=10116 GN=Lman1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03388 all species →	Lectin_leg-like	Legume-like lectin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005052 all species →	Domain	Legume-like lectin	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR051136 all species →	Family	Intracellular Lectin and Glycoprotein Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12223 all species →	VESICULAR MANNOSE-BINDING LECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005537 all species →	Molecular Function	D-mannose binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005793 all species →	Cellular Component	endoplasmic reticulum-Golgi intermediate compartment	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10080	LMAN1, ERGIC53; lectin, mannose-binding 1	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.