Gene detail

Detailed information of Ppa0G069210 in Paragorgia papillata

Genomic Location: Contig00082:1002908...1020906
NR annotation: XP_028405940.1, serrate RNA effector molecule homolog isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G069210

ATGGACAGCGACGACGAGTACGAACGTCGACCTAGAGGCAGGGATAAATTTCGACGAGAAAGAAGCGATTACAACGATCGTAGTGGCAGAAGAGACGATCGTTCTTCACGACGAGACGAGTGGTCAGATAGGAGGAGACCTGTTTGGGAAGGTCAAGGAAGAAGGAAGGAGTACAGAGATTTTGATCGTGATCGAAGAGACAGTGGAGGAAGACATCATGATATAAGTCCTCCAATGAAAAGAGTGCGAAGAGATTGGGATAATGTCGGTGGTTACCAAGGTGAATATGTTGGTTATAATCCAATGGTCAATCAATGGTCATCACCAATGGAGATGCAACCAGGAGTTCATCAACGACCATATGATAACACACAACCTCCTGTGGATGCTAACGCTGGACCAACCATGATGACCTTTAAACAATTTCTTAATTCAATGGAAGACACAATTGATGATATGGAAGCAGTGAAAAAGTACCAGGAGTATAAAGTTGAATTCCGTAAGACACAAATTGCTGACTTTTTCACAACTCACAAAGATGAAGAGTGGTTTCGGAATAAGTACCATCCAATTGAAAGGCTTACTTACCAAAAAAAGGTTAACGCTGCAGTCAGGAAACGAGCTGCAGTGTTTGTTGATCTGCTTCAGTCTGGCTGGCTTGAAAGATTTTCATTATCTGTGGATCAGGGAGAAGATATAAAAAAGTTACTTGACGCTGCTGTTATAAAGTTTGAAGGAGGTTCTGACTTGGATTTGCAAATTCTGAATGAACCAGCAGAGCAGGAAGTAAAGAGTGAACCAGCCAAAGAAAATGTTCAGCCTGAAAATGGTGGTCAAATTACAAGCAAAGAAATAAATCAAGAACAGGCAGTCTCGCCATCTTCAGTACCATTACCTGGAACTCCGGCGCCACCATCAGCTTCTGTGAAAAATGCTGTTTTCAAGGCAGAGGATATCAAACCTTTAGAGATGTCTGACCCTTCACCAGAGCAATTAAAACTACGCGAAGAACAGCAACAGAAACAACAAGAACAACAGAAAGAAAAACAAGAACAGAAAGAAAATGTACCACAAGATCAGGCTCCAGTAAAGAAACGTAAACGAAAACGTCGTCATCGTGAGCCTTACTACTACGATGAAAATGGCGAGAGCGAGAGTGAATCTGAGTCAGACGTTGAATCCGAACCTGCCCCCCCTGGAGAAGAAACAGCACCAACTGAGGCCCAAGAAAGAGCTGCTGAAGAAAGATTACTCCCCCCTGGTGTGGATACTGAACCGATCTCTGCTGATGAGGCGATGGTTCCTACTGACAAGCAAAAGGAGATTCCAGTAAGTAACGAAGCAACAAAAATGAACATCTCCGAACCTGATCAACAACCTCTGACCGTTGAAAAACAAGAGCCAGACAAAACAGAAAATGATGAGCCGAAGGAAGCTCCCTTACAAGATAATGTAGCTGAACCTAAGGACAGCAAAACAAATGAGAGTGACGTGAAATTACAATCAACAGAAACTAAACACGAGGAAAGATGTAAAAATACTTTTGAACTTTCACAGGAGAAAGAGGGTGAAACATGTGATGTTAAGAAAGAAGAGAAAGGAACGGAAGACGAGGAAAGTAAAATGGATACAACTGATAGTACAGAAGTGAAAACTGAACCAGCCAAAGAAGAAGAAGAAGATGGTCCCAAACCAGAACCAATACCGGAAGTGAAAACACCTCAAGCTCTTCATCGAACAGTGTCGTTGTTTGTTAGAAATGTGCCGCCTAAGATCTCACATAATGATATAGCTTCAGTTTGCAGTCGTTTTCCTGGATATATGCGTGTGGTGCTTTCTGACCCTTCTCCCGAAAGAAAATTCTCCCGCCGTGGATGGATTACGTTTAAACCTGATGTGAACATTAAAGATATATGTTGGACTATAAATAATATTAAGATCAAGGAAATCGAGCTGAATCCGATTGTGAACCGGGAACTGGCGAGACGAGTTCGAACAGTCTCGGGAGCAAGCGTGTTGAAAGAACTGGTGAAAACTGATATAAATATGGCGACGAAATTAATTCAAGAATTGGATGAAACGTTTGGAGTGTGGAAACAAATTGAGGAAGAACCATTGAAAACAATTGAAGAGGAGTCGAAAGGGAAGATTGAAACGACAGTGGAAGAAAACGACGACGAGCAGAAAGCAGAGATGGAAACGGAAAGAGAAATCCCCAAATCAAACCCAGTTTTGGAACTACTTCCTGCGAACACACCCGACGATACCCCAGGAAAGAAAGAGGAGGCGACTGAGAAGCCTGGTGACGAAGAAGGACAACTTACAGAAGAGGGTCAAGTTGCCGAGGATGGTCAAATTCCCGTAATAGGGCAACCCCCCGAGCATCCCGCTCCAGTTGTGGATGAGAGTTTGATCAAGTTACTGGATCATCTGTTGTTGTATCTTCGTATAGTACACTCGCTTGACTACTATAGCGGTGCCGAGTATTTATACGAAGATGATATGCCTAACAGATGTGGGATTATTAACATCAGGAATTCATTGCCAGAAAAAGTCAATTACGAAGAAGTTACTGAATGGCACAAGAATTTACACCAAAAACTTGATCAACATTTGCAGAAAAAAGAGCAAATTCAAGACGAGGAAGCCAGTCAGTTAGGGAAAAAAGATCAAGACCAATATCTTTTTTATAAACTAATGGAAAAATTCATCCAAGCCAACACTCAAGAGCTAGCCAAAGACAAATGGCTGTGTCCTTTAAGTGGTAAAAAGTTTCGTGGTCCAGAGTTCGTTAAAAAACACATCTTCAACAAACATGCCGACAAAGTTGAAGGAGTAAAAACCGAGGTAACTTTTTTCAATAACTTTGTATACGACCCAAAACGACCATGTGAACTGGAGGTAAGATCGATATCGCAGGGAACGCCCGGAAATCAACATTTCCCTGGCGCAATTTCACATCCGGTTGGAATGCAAGGCAATATGGGATGGGGACGAGGTGTTGGAATGATGCAAGGTTTTGGTTCGCCTCACATCTCACCAAACTATCGTTCTGGTCCAGATCAATTTAACAACAGAGGACAATCTTATCAACCTAAGCCAAGACGTGGTGGTGGTGGTTCTCTACGTCGTGATCCCAGACCTATTGTCCAATACAAAGACTTAGACGCCCCTGGTGATGACGTCGAGTTCTTCTAA

Transcript

Ppa0G069210

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INH5	Serrate RNA effector molecule homolog B OS=Xenopus laevis OX=8355 GN=srrt-b PE=2 SV=1
Q66I22	Serrate RNA effector molecule homolog OS=Danio rerio OX=7955 GN=srrt PE=2 SV=1
Q9BXP5	Serrate RNA effector molecule homolog OS=Homo sapiens OX=9606 GN=SRRT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002648 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04959 all species →	ARS2	Arsenite-resistance protein 2	Family	Interproscan
PF12066 all species →	SERRATE_Ars2_N	SERRATE/Ars2, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039727 all species →	Family	SERRATE/Ars2	Interproscan
IPR007042 all species →	Domain	SERRATE/Ars2 , C-terminal	Interproscan
IPR021933 all species →	Domain	SERRATE/Ars2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13165 all species →	ARSENITE-RESISTANCE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27103	SRRT, ARS2; serrate RNA effector molecule	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.