Gene detail

Detailed information of Ppa0G071590 in Paragorgia papillata

Genomic Location: Contig00086:1923398...1979761
NR annotation: XP_028399124.1, ubiquitin-associated protein 2-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G071590

ATGAAAGGTGGGACATCTAGCAGTATTCGGGGCCAACAAACACCATCCAAAACAGAAAAACAATCTCCTCAGGGGAAATTTCAGCCTACGGCAGAGCAAGTTCGTTATGCTCAATTACTTAACCACGATGAACCAGACTGGTTGAAAGACAAAATTCTCCAAGTGGTTGACTTGACAAAGAAGCCTCGAGACGAGGTAGCGATTGCTCTGCATGACTGTGATTATGTTGTTGAAGCAGCAGTTAATAGCCTGTTGGAAGGAAAATATGACCAGGGTGAGTGGACAACGTTTAGTTATCGTAAAAAGAAGAATACAGCTGCTGACACAATATGTACGGTCAATGCCAAATCTACATCACTCAACGTAAATACTAAACAAGATCAGAAAGAGACGAAGGATGGAGGAGGAGGAAGATCGCAGTCTGTCGAGTTTAATAACAGAAAAAATAAAGGACAGTCCGACAGAATATCAGAGAGCAATGATACGTCGAAACAGAATGGTCCTCTGAATGACACTAGACCTGCTGGTGGAGGGAGAGGAAGGAACAGAGAGGACCGAGGGGATCGTGGATGGGATAGAGGAAACAGGGCGGATCGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGGTGACAGAGGTGGTGGTGACAGAGGTGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGGTGACAGAGGTGATCGAGGGGACAGAAGAGATCGTGGGGACAGAGGGGACCGTGGTGATAGGGGAGACAGAGGGGACAGAGGGGATCGTGGGGATAGAGGTGATAGGGGAGACCGAGGTGACAGAGGAGACCGAGGTGACAGGGGGGATCGTGGGGATAGAGGTGACAGAGTGGACCGCAGTGACAGAGGTGATCGTGGTGACCGAGCTGACAGAGGAGATAGGAGATCTGGTGGACGAGGTGGTTTTGTAAGAAGAGGTGGAATGGGGCGAGGAGGAAGAGGCGGAAGTAGGTCGAGAGGTCGATTTCCTAACAATAACAACCGATCATTTGGACGCAGGAACGACCAGACGAATGGACCATCAAGGAATACAGATTTTGGAAAGAAAGGTGATAGTTCGGATAATGCTCCACAAAAGGAAGAAAAGGTTTCAACAGACTGGGCGGCGTCTGAACCTCCAGCTCCCAAAGAGTGGGGTGCTGATGACTGGAGCAGTGAGAAACATGATCTGATTAATCCTTTGGATTCGCCATCGTGGGCAACAGCGGATAAAGAGAAAGAAGTACAACCAGAAAAGAACATAACCAATCACGTTAATCATTTGCCTGAATGTGACGATGACGCCATCCTAAGTTCTAAAGTAGCTTCAAGCAACAGTGGGAGCGGAGAACACTTTGTTTTGTCAAGTGAATTACTCGCCAAGAAAGTTGCGAATCCGATCTCGAGAACTGAAAATAACCTGCCAAAAATTTTAAGTAACCTTGCTACATCAACAACGGACTTGTCCAGAATACAAACCACGTCGAACAAAATGGTTCCAACTCAGCCATCTTTGACGGAATCTATTTCTGATAATCCACAACCTCAAAGACAACAAAAAAATCGGACGAGAAGGGTTCAGAAAAGTCAGATTCCCAAACAACCTGTGGAAATGCCTGGTAATAATAATGGAATGGATTCTCTTGATGTTCAGGGGGCATTGGCGGGAAAATTTGGTAACCACATGGCAGCCGCCATTACCTATGATATTTCAGTCAATTGGTTGGCAAATATACTAGACCCAGTCCTCTGCCAACCAACGCGCCTAATACATTACCCACCACCCCACGGTGCACCTAAAGTTGATCTGAGGGAACCTCAAACTCCTCCAATGACTAAGAAAGTAGACGTGTCTACATCTCCTCTGCCGCTCAGTTCTACCATGACAGTTTCAATTGCTAAGAATAATAACGAAGGAACAGTAGTGAGTCGAGGCACTTCATTACACTCTCAGATTGAAGCGATTGCTACTTCAGATGGCAGACTGGATGACAGGCCTGCTATTCATCACTCGTCTTCTCCGCGTTCAGACCAGAATGCCATGCGGTCACGTCTCTCTGGCGTAGGCCCTACCACTTCGTCAACGACAAGGTCACACCCGACACCTGCGGGTGTTAGCCTGAGTAGTAGCTCCGTGTCTGCGGGCCCTCCACCTGGAATTATTCCAGGTATTCAGAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGACAAAAAGTTCAAGTGCAGGTGTTATGAATCGACAGCAAGCTCACGGCAGTAATCTATCATCTAGGTGTGCGAGTGTGTCATCTAGGTGTGTGAGTCTATCATCTAGGTGTGTGAGTGTATCATCTAGGTGTGCGAGTGTGTCATCTAGGTGTGCGAGTGTGTCATCTAGGTGTGTGAGTGTGTCATCTAGGTGTGTGAGTGTGCCATCTAGGTGTGCGAGTGTGTCCTCTAGGTGTGTGAGTGTGTCATCTAGGTGTGTGAGTGTGTCATCTAGGTGTGCGAGTGTGTCATCTAGGTGTAAACATCCCAATCTCCCACCGGGGGTTTTACCCTTGGCATATGGTATGCAGCCTGCACCAGGCTTCCCTGGGTTTTCGCCATTAGCTTATCCATTGGATGATATTCAAATGATGCAGAGGTCTCCTTATTATGACATGCAGTTCCCATTAGCTGGACGAGATGGAGTCCAAACTACTTACTCAGGTGCAGATGTCAAGTACAACCGAAACGACACTTCCTCTCCCGTTCCTTCATCTCTTACCGCCGGACCTCATGGACAACAGGCGCCGTTTATGAATACGCATGCGCAGTTGCACCCATTTGGTTACGCTGGTAACCTGGCCTTCTATCATGGTGGTGGAATGATCAGTGGTTTTGCTGCTCCTTATACAACACAGATGTATCCATTGCCTACAAAAGGTCCAGGTGTAACAACCCAGTTTCAACAGAACTTTGGCAATCAACTTGGTCCTCATTATACCTCAGGTTACGATGGCTTGGCAAATGCTCACGACTTTACAAAGCAAGGATATCAGCATCCTGCCCAAAGTAAATCTAGTTCAGGAAGTACAGCCAGTAATAGTGCGTCGGATTTATCAACTGCTTATAAAGCACAGTGTTACAAACTGGTATTGAAAATGGCTTCAAATGAACTTAGTCCTCACGATGATTCAGAAAGCCAAAGTTATCCTCAGAAGCGTCATGTAGATGACAGTGACGAATATGATGGACAAACCAAGAAGATGCGTTTGGTTGAAGCTGGTGAAGGTCCCCAAACTCTTCTTAGGATATTGGTCAATAGCAAGGATGCAGGAGGAATAATTGGCAAGTCTGGAACCAACATCAAAAGGCTAAGAGATCAGTACAAAGCAACAGTCAATATCCCAGATACAAGTTGCCCAGAGCGGGTTTTAAGTATAAGTGCCTCGCTTGGATCTGCCTTGTCCATTCTTGCAGAGAGTGTTCCAAAAATATGTGAATCTGCTCTGCGTGTCAATCCAAAAGACAATCCTGAAATCCAGATGTTGGTTCAACAAAGTCAGGCTGGAAGCATAATTGGAAGAGCTGGATTCAAGATTAAAAACTTACGAGAGGTATTCTCTGATTGCCTTCCGGAGTCCACAGAAAGAATTGTCGCAATCCAAGGTCCATCTGATAGGATTGTTCATTGTGTTCAATTAATTTCCGAGACTTTGCAAGATACACCAGTCAAAGGAACTGTAGTTCTCTATGACCCCACCAATGTTGGTTCTTTGGGTGGCGGCGGTTTTGACCGAGGTTCTGGTTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGGGGTAGAGGAAGAGGTGGGCGAGGGTTTGGTGGACGTGGAGGAGGAGGTGGTGGTGGTCGTGGGGGTGGGGGTGGCAGGAACTTTGGACCAGGTCCAATGAATGGTGGTGGCAACAGTGGAATTGGGAACCTCTTTGGTGGAAATCAAATGCCTGGTGGTGATTTCCCAACCGACAACTTCCCTGGTGCAGGAATGGATCCTTTTGATCAAGGCACGACCACAACACAAGTTACCATACCTAAAGATCTGGCTGGTTCTATCATTGGCCCTGGAGGGAACAGAATAAATCGAATCAGACGTGATACTGGTGCGACAATCAAGATTGATGAAGCTATGCCTGGTAGTAATGATCGGGTCATTACAATAACAGGAACACAGGAACAGATTAACCACGGCCAGTATTTGATGCAAAAATGTGTTCGCGAGTATTCAGGCAAGAAGTTCTAA

Transcript

Ppa0G071590

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIQ3	Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus OX=9031 GN=HNRNPK PE=2 SV=1
P61978	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens OX=9606 GN=HNRNPK PE=1 SV=1
P61979	Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus OX=10090 GN=Hnrnpk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002480 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF12478 all species →	UBAP2-Lig	UBAP2/protein lingerer	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR051833 all species →	Family	Transcription-coupled DNA damage response regulator	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR022166 all species →	Family	UBAP2/protein lingerer	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16308 all species →	UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G071590.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.