Gene detail

Detailed information of Ppa0G079480 in Paragorgia papillata

Genomic Location: Contig00100:9103...21977
NR annotation: XP_028394156.1, protein gar2-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G079480

ATGGGCAAAGAAAAAGGCAGTAAGAAGAAGAGTAAAAGTACTGGTGATGTTGTTGATGAAACAAAAAAGAGGAAAATGGTCGAGGATGACGCTGCAGTTGTTTCCAAGAAAGTGAAAAAGGTATGGAAAAGAAAAAACCCAACTTTCATCACTAACAAATATACAGCAGTAAATGGAAAAGATAAAAAGAAGAAGAAGAAAGATATTGAAACACCAATGGAGGTTGACAAAGAGTCTAGTTCTTCGTCAGAAGATGAAAAACCTCCCAAAAAGAAGACACCTGTAGCCGCCAATAAACCAGGCAAGCCAAGTGCTACCAAGTTGAAGGGAGTGAAAGAGGGTGCTAGTGATTCTGAGTCCGATAAAGAGAAGCCATCGGGAAAGGCGAATGCAAGCAAGAAAGAGTCGAGTGATAGTTCAGATTCTTCTGAAGACGAACAGCCAAAGCCTGCTCAATCGAAGCCCGTTCCACCTAATAAGAAACCATCTGATGGACAGAAGTCTCAAAAGGCAACCAAGTTGAAAAAGAAGCCAGCAGCCAAGGATGAAGCCTCTGATGAAAGTAGCTCTTCTGATGAGGAGGGAGAAACATCGAAAAAACCAGTCACCCAAGTGAAGCCTGTTCCGGCAAAAGCGCTTAATAAGAAGCCATTGGATGGAAAGAATTCTGCCAAAAAGCCTGAGCTGAAAAAGAAGGCACCCAAGGAGGAGTCTTCTGACGAAAGTAGCTCTTCGGATGAAGAGAAAGAGGCAACTAAGAAACCAGTTACCCAGGCTAAGGCTGTTACACCAAAAGCTGAGGCTGAAAAGAAAGAGAAGAAGAGTGATGATAGTTCAGATTCTGAAGACGAGGGAGAGAAAATGCCTCCTCCAAAAGCTCCAGCCCCAACAAAAGAAGAATCGTCAAGTGACGATAGCTCTGATTCAGACGAAGAGGAGACCAAGGCACCCATGAAAGCTGAAGAAAAGAAGACGCCAGTATCGAAGACGAAAAAGAAGAAAGATAATAACTCGTCCGATGAAGAAGACTCAGATGAAGACTCTAGTTCTGACGAGGAAGAGAAATCAGGAAAGAAAGGAAAAGCTAAAAAGGATGAAGAAGATAGTGATTCCGATAGCGATTCAGATGATGACTCGGAAGATGGAGCTCAAAAACAACAGCAAAAGAGTGGAGAGAAGAGAAAGTCAGATGGCAATAATAATGGCTCGGCAAAGAAAGCGAAAACGGACGAAGAAGATGATGGAGAACCACATACAGTGTTTGTTGGCAACGTTTCTTTCGACGCTGGTGAAGATGATCTGAAAAATCTTTTTGAAGAAAATGGTCTTTCACCTTCCGGTGTTCGAATCTTGACAAGCGAAGGACGATCCAAAGGTTTCGGTTATGTTGACTTCACAACCGAGAATGATGCCAAGAAGGCGATGAAACTGACTGGGACCGAGCTATGCGGTCGAGAGTTGAGGATTGACGTGGCCACTTCGAGCAGAGGTGGTGGGGGTCGTGGAGGGCGAGGAGGAGGACGTGGAGGTGGGGGTCGAGGAGGAGGAGGATCGCGCACACCTCAGAGGGAACAAAACCCACCATCGAGCACTCTGTTTGTCAAGAACTTGTCGTTTAGTACCACAGAAGATTCATTGTACGAGCATTTCGAGGGCTGTTCTCGAGCACGCATTGTTACTGATCGAGATAGCGGGGAGTCGAGAGGCTTTGGCTACATCGAATATGACGGAACAGACAGTGCAAAGGACGCCAAGCAGAAAATGGATGGTCATGAAGTCGATGGGCGACGACTGTTTTTGGACTTCGCTGCTCCACGAGACTCCCCTAGTGGTGGAGGAGGAGGTGGTTTTAGAGGAGGGCGCGGAAGAGGAGGAGGATTCCGAGGAGGAGGAGGACGAGGTGGTGGTCGAGGGGGGCGTGGTGGTTTTAATAAGTCGCCTGGTGTTGCCAGAAACAAAGGCTCTATTCAAGAATACCAGGGTAAGAAGACCACGTTTGGCGATGACTGA

Transcript

Ppa0G079480

Protein

Uniprot

Uniprot term	Description
P20397	Nucleolin OS=Xenopus laevis OX=8355 GN=ncl PE=2 SV=3
P15771	Nucleolin OS=Gallus gallus OX=9031 GN=NCL PE=1 SV=1
P08199	Nucleolin OS=Mesocricetus auratus OX=10036 GN=NCL PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11294	NCL, NSR1; nucleolin	-	Chromosome and associated proteins	ko03036	deepkoala