Gene detail

Detailed information of Ppa0G099620 in Paragorgia papillata

Genomic Location: Contig00115:1590291...1604027
NR annotation: XP_028414784.1, UNC5C-like protein isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G099620

ATGGCCGAAGTGTTAATAAGATTACTGTTGCCTTTCGTTCTGGCATGCTTCTCTACAGTCGCCCAAAGTTCAGAGGTTCCTGATAACCAGAACGTCGAATCACGGTTCGAACAATCGGAGAACAAGAAAAGACCTATCCTAAAGCTCGATCTATCGTACATTGCGAAGCCAACTTCGTCATTGGTTGATATATTATGCCGTGGAAACATTAGTGGACTCTCTTTGCGCATAATATGCCACAAGTTTGACCATAACATAGAGAATAACTCGACAGTTTTCGCGTATTTGGAGACAGTGGGTTTCGACGAACAAAAAACAGATGAAGAGGGGTATTCATATAGAAGACGAATACTGCAATGGAAAACTTTTGAAAAATTTAGAACATCCTGCCAGTGTCAAGTCGAAGCGAGTTCATATCTCAGGACTGATGTCGCAACAATTACCATTCGGAATAGAAGGCCGAAAAAGAATGCCACGAAGCTTCTTCGACGAAGAGTAAATGCAAAGAAGTTCATCGAATTGCAATGTTACGTATTTGGCCGTCCCACACTTCACGTTACGTGGTATAAAGATAACACACCATTGCAGTTGAAGGCAACCTCCTTCATCAGTGGTACCAAGTACAAACTGAGAAATCACGCGCTAAAATTAAGTAGAGCTGATCCGAAAGGCTCTGGATTTTACCAATGTCTTGCCAGGAATATGGCCGGTACAGCATGGGTATATAGCGGTTTCTTTCGTTATATAAAGGTGAAAAAGTCAAACTGGAAGCGCTCTCCTTACATGTGGCCAATGCGAAATTTTGGCGCTAACCACTGTGCCACGTATACCAACCCAATGACGAGTTTTAATGAGCTTTGCAATTTTTCAAATTCAGGGACTTCCAAGAATTTCCAAAGATTTTTAGTGATTTTTATAGATTTTCAAGGCGTTGTTGGCACTATTTCATCTCATGCAGGCAGAAGACGATGTCTTGTTCAACCTTGTTCAATGTCGTACAATTCCGATGTTTCACGTGTACTGAATAAACTCATCATGCCACCAAAAGCGAATGACAGATATTTCGCAAGTGGATTGGTAGACCACAATGGAGGTCACTTGGTCTTGAATGGCACTGATATTAAGCTCATCATACCAGAAGGAGCAATACCAAAGGGAAAAACCGAAGCCATTTACATTTCACTGATCGAAACAAAGCAATACTTTCCACAACTCGAAGAAGGAGAATCTTTGTTGAGCCATGTTGTAATGTGCGGACCTCATGGATTACGATTCCAAAAACACGTCCTTTTAATCCTCCCGCATTGTGTGGTCACGCAAGGACAAAGAAAAACAACGTTTCGTGTACTATGCAGTAACACTGCTCCAAAAAACGATACAAATTGGGAGGAAATATTCAACACAGGAAAAGATGCAAGCAATGATTGCTTTTGTGACATGGATGACAGTTCGTTTAGCTTATTTGTCTCTCACTTTTCGTGGTACACCATACCCGGTGATTGTGAGAAAAAAGGGTTTACAATCACAGGCTACCATACTAAAGTTCTGCAGCCCTTGGAGCACTTCAAAATACGCATATATTGTATACCAGACTTTAAGGAGATCCGTCAGGTAAATCTTGACGTCGAAAAAGAAGAAAATGAGATACTTAATGGGGTAATGAGTGACGCTAGGAAACCCATAATTTTCTACGAAAACGGTGGAGATCTCCTTATCAACGCCACATATACATCACAAAGATGGAAAATAATTAATGACAAAAACAAGAAGCTCGACTATTCCACGATCTGGAATTGTTCAATGAATCCACCCGTCTCAACATTTGTCCTGGAACATGTTGCTCCACAACCAAGACAAATCTACTGCCTATTCAACATTGTGCAGAAAAAGCTGGAAGAAAATTTTCAACCAACAGAGGTCATTGTATCCTATTTTCCCAGGTCATCTAACAGTTCGTCAATTGGATACGGCACGTTGTCTGGTGACCCATCTGGAGCGGACAATACCAATATTGGATTCATACCTAGGGACCTAAAATTCTCCCTGAAACTGTTGTTGGACGTTCCTCGTGCAGGTAGATACGACTACCTGGTTCTGGCTGACGAGCTGGATTTCGAACCAAAGTTTGGGCAGTGGTTGAAGACTCAAAGTGAAAGCCCCACCGAACTTCTTCTCACGAAGTGGGAACACACATCTAAATATGATAATCCTGCAGAAGCTTTGCGTCATCTCAGAGAGGTTCTCAAAAACATGGGTCGTGATGATGCCGCAATGGAAGTGAACAAATACTGTCCTCTTCCCATCAGGGAGCAAAAGGTGACCACAGTTTAA

Transcript

Ppa0G099620

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07157	Tight junction protein 1 OS=Homo sapiens OX=9606 GN=TJP1 PE=1 SV=3
O97758	Tight junction protein 1 OS=Canis lupus familiaris OX=9615 GN=TJP1 PE=1 SV=1
P39447	Tight junction protein 1 OS=Mus musculus OX=10090 GN=Tjp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004837 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR037936 all species →	Family	Netrin receptor UNC5	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582 all species →	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005042 all species →	Molecular Function	netrin receptor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038007 all species →	Biological Process	netrin-activated signaling pathway	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G099620.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.