Gene detail

Detailed information of Ppa0G099920 in Paragorgia papillata

Genomic Location: Contig00115:2009936...2041281
NR annotation: XP_028399631.1, protein bicaudal C homolog 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G099920

ATGATGGTCAACTTGGCCTCCGTTGACGAGGAAACGGAAAACGAAACGCCTGCCGAAGCACCAAAGGAAACTCTCGCACACGATGAGAAAGAAGAAAAGGTTCGCGTCGACAGACGAAAGTTGGAACAAATGTTACAAGCTAACGGAGACGGGGACCGTACAATTGCCGAGGAGTTTTTCTCAAAGGTAATGCTCGACACAAGTACTCGCATCTCGTGGCCTTCGAAGTTGAAGATTGGAGCGAAGTCCAAGAAAGATCCCCACATCAAAATAGCTGGTCTACCAGAGAGTGTTAAGAAAGCAAAAGAAATGGTTGTAGCAAAGCTTGAGTCTAAGGCCAATCGTGTGACACTGAAAATGGACGTTTCTCATACAGACCACTCACATATCATTGGCAGACGAGGTCAAAGCATCAAGACAGTTATGGGAGAAACGGGTTGTCATATTCATTTTCCTGACTCAAACAGAGGCCCGACAAACACCGAGAAAAGCAACCAGGTGTCTATTGCCGGACAGCCAGAGGGGGTAGAAAAGGCCAGAACACGAATACGGGAACTTCTTCCCTTAGTATTAATGTTTGAAGTACCACTGAATAACGCGTTTCTACCACTGGACCCTTTAGCTCCGTCAATCCTGACCATTGCACAGAGATATGATGTCACTTTTACACCTAGAGGGACATCGCCAGTAGGATATCTCGTTGTTGCCATAAGAGGAAGCCAAGATAATATATCAAACATTCAGGAAGCCATGGGTTGTCTTTGTAAGCATCTTACAGGCCGTTTTCAGATTCCAAACATCGTATCCCTACAGTTTGATATCGCTCCTCAACATCACATGTTTGTAGTTGGACGTGCAGGGTGTAATATTAAAGAAATTACGGACGCCACTGGAGGAAACGTCACTATTACAGGATCGGTCAATGCCGTTATTCAGGCCAGAGCGATGCTTGTGAAATTGTTGCCACTTTTGCTAATGTTTGACTTGAAAGAAGAAGAAGCAAGGTCGCTTGAAAACGAACCAGATAAACTCAAGAAATTGATGGACAAATTCAATGTGACAATAATGGTTAAACCGAAGCCCAAACAGCCCAGTAAGTCGGTTGTTATCAAGAGTAAAGAAATTAATTCTCAAAATATGTACCTTACCCGTCTGGAGGTCCTTGGTACGCCAATGGACCCTTACGCAACGCGACACCCGTCGTTTGATAGCTTTCATCGACACGTCCATGGACAAACAAATTTCCCACCAACTAGTATCCAGGCATGGTACCCAGGAATTGGACAGAGTCCATATTCGTCGCCAACCGCCTCACCAACACCATGCCTATCAGATTCGACTGGTCGAATGCGAAGTACTCCATCACCAACTCGATTGCCACCTGGTTTTGAACCCAGCTTCAAACACGATAGATCCGAAAGTTTCACTAACGGAGAAACTCGGGAGCGCTCTCAAACGGGAGAATCCCAACGCGCTCGTTCTCAAGGAACGCCTGCCTCGGATGGAGGTTCCCCAAAGCAATTTTCTGAGTACGGTTTCCCCCGTCGCAATTCTGAACCAACTCCTATCGGTGAGTCGTGGAGTTCTGATCAAGCAATCCTGGATTTAAAAAAGAGTACTCACCCTCTACTTGACTCGCATGGCTCTAATCTAGCAAGCTCTGGAAATTCTTTGACTTCTTCGCTGGAAGGAAGGGAGCGAGGGATGGGAGGAAGGGAGGGAGGGAGTCAGCTATTAAAGAACAATACCAATATAAAGCCCAAAGTTTCCATGTCACCAACCCTATGGATTTCAACAGTCAAAGTGGACGATGGTAGGTCATCCTATATATGTATATCTATACCTTACTATATTTCGATAATTGTTTCTACACTGCCTACGCAGCACGCTACTTTTATTTTACATTTTAAGAATATTTACAAACCACAAACGCCGTTCATCCTCATTTTAAATCTACTTTATGATGATATCAGAAAAAGACTGACGATTTTTCGCCTCATTTCTGGATTTTCGAATTTGAATTTTGAGATTCAACTCGTAAACATTGTAGTTTTTAATGTTTATGTCAATGGTAATCGTCAACGTCAATCTTCTTTGAAATTTTTAAACTTTTCCTCTCTGATGATTTATAAAACCCGTGGAACTTTGAAGGAAGTTGGCTTTCTGTTTATTCAAACTACAATCCTATCACTACAAACAAAAAGAGTATACACTTTACTTCGATTATATATGGTGAGCTTGACAAACTCCAGGTCAATGAGTGTATATGCTGTAGTACATACAAAACGATTCTATGTCATTCTTATACTCTTTGAAGATATAGATTCATTTGAAAAATTTGTGATATTCAAACTTACCATGACTGGTATATCTTTTCTTGATTCTTATAGTTTAATTTTTAGGAATGGCTTCGGGGTCAGAAAAATGTTGTGGAAAAAATATAGCATACATCCCTCGTTCTCGGGATTTATCTATTACTTAAAACACGAGGCGATATCCGACCGATTTGGTAAGTTCATTGGCGGGAAAAAAAGAACTGTACCAACAACTGGCATTTGA

Transcript

Ppa0G099920

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U4T7	Protein bicaudal C homolog 1-B OS=Xenopus laevis OX=8355 GN=bicc1-b PE=2 SV=1
Q9IA00	Protein bicaudal C homolog 1-A OS=Xenopus laevis OX=8355 GN=bicc1-a PE=2 SV=1
Q9H694	Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003620 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047554 all species →	Domain	BICC1, second type I KH	Interproscan
IPR047549 all species →	Domain	BICC1, first type I KH domain	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10627 all species →	SCP160	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18756	BICC1, BICC; protein bicaudal C	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.