Gene detail

Detailed information of Ppa0G102180 in Paragorgia papillata

Genomic Location: Contig00119:96797...155839
NR annotation: XP_028404782.1, phosphatidylinositol 3-kinase regulatory subunit alpha-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G102180

ATGGCAGGCTACGCATCTTTCACAGCGTTGTACAACTACACACCGAAGGAACGAGACGAGATCGAGCTTCGAGTCGGCGATGTTATTTTGGTGAAAAAGCCATTCGACTCGGACAACCTTCTAAATTGGCTGGAGGGGGTTAACCAGAGGACGCGGCAATGTGGACAAATTCCTGGACCGTATTTAAAAGAAGTCCGGGAAAATGGTCACGAATTTCATAAGTTAACTCGATCAATTCCTGTCTGCTGTGCGAAATGCAAGGATTATATTTGGGGCAAAAATAATAAACTTTATCAATGCATTGTATGCAACAAGCCTTTCCACTTGATATGTGCCAAGGAAAGTGACCAGTGTACAAATACTGGAATAAATGAAGATGAATCTCCGTATGACTCAATAGCTAAGTCTCCACCTGAATGGTCTGTTGAGGATGTCATTGTTTGGATGGCTGCTGTCAATATGTTTGAATATGCCAGTAGTTTTAAACAACATAAAATCGACGGTGGAACGTTATTAAACTTTGACGAAGCAAGACTGAAGAGCATGGGAATTTCTGACGAATTTCATACAAAAATGATTTTGGTCTGCATTGGCGAACTGATAGGAAATTCTGAAAAACGAAAGACTAGGAAATATCCTGGAATGAAAATTGGTCAAAGAGGCTCCATAAACACTCACGCATTTGTCTTGCAAACATTTACAACTGTTACATGGTGCCATGAATGTGGACATATTCTATTTGGTCTTGTACGACAAGGCCTTCAGTGTACAAGTAAGTTGTTTATTGCGTTGAGAATCACGGGTGGAATACAACCTATATACATGCCTCCTTTAGAAAATAATTCTGTCCCGGCAATTGTAAAGAAATGCGTCGGAGCAGTCGAAAGCAGAGGTCTGAGGACTAGAGGGATTTATAAAAGTCAACCGGAGAATTCGACCTCGAAGTATGCTCTAAGAGCTGCTTTATATCAAGATGCTGAAGATGTTGATATGAAAGACGAAGAATGGATAAATCCTCTGTGTTCCTCGGCTGTTTTATTATCTTACTTAAACGAATTGCCAGATTCGCTTCTGCCTTCAACGTTGTATGAAGAACTAGTGGAGAGTGCAGAACAACCCAACGATCGTTGTATGTCTGGTCTGGACAGAGCTTTTGAAAAACTACCCGAAGTTAATTCTGAAGTCCTAAAGTATATTCTAGAACATTTAAATCGTGTTGTTGCGTCAGAGAACTCTATGTCAGAGAAAGAAGTCGGCACAGTATTTGGACCATTGCTATTAAGACCGTCTCAGGATAATCTCACAAAAATGGCAAAAAATATCGATGCTCACTCCAGAGTGGTCCAACTTCTGTTGGTAATGAGAAAGCAGATGGACGCAATCGAGATAGAGCCAGACGATTCGGATGAAACTCTCATATCTCCACCAGTTCCTCCACGACCCCGACAGGCTTCTGCTGAAGTTTCACAAAAAGTTGAAAAGGCCGAGTGGTACTGGGGAATGCTTGAGAGGCAAGACGCCCAAAAAAAGTTAGATGGCTGTAGAGATGGTAGTTTCCTGGTCAGGGACAGCAAAGCTTGCCCAGGAGAGTATACCTTAACTGTAAGGAAAGGTAACGAATCAAAACTCATCCGCATATATAATCAAAGTGGCAAATATGGCTTTGCTGATCCATTCGAGTTCAGTTCTGTCCCGGAATTGATCGATTATCATCGTACTCACTCGTTGAAAGACTACAACGCACAACTGGACATATTGCTTCTCTATCCTATATGTCGCGAGGATGATGTGTCTGGAGTGAAAAAAGCAACAAGAGTTTTAAAAATAGCTGGTGAACAATTCAACGAGAAATCCATCCGATATGAACAATTATCAGAAGAAACATTAGAATGTGAACAGGAAATTGCTGCTCTAGAAGAAGCTGTTTTTGCTCAGAAAGAGTTGATAAATTTTCTGGAAGAACAAGTTAAAATTCATAAAAACTTCCAGAGAGAGGCGCCACCAGGCGAAAGGGAAAAACTAGAAATGAACTATAACCTGGTTGCTGACCGGCTTTGTGAAGAAAACCGTAGTTTAAGTTGTTTGGAGCATGAATTGTTAGACAAATCTGAACTAAGGCGGCGTTTAGAAGCTGATATGAACCGCATCAGACCCGATTTATGGGAACTTCAACACACTAAAGAAAAATATATGAAGTTCTTGGAAGATAACGACGTCATGAATCGGGAGGAAGTGGAACTTCTTGCTGGAAATACTGATTTCAAAATTTACGAACTTCCAATGACGGAAGAGGAAGAAACGGCCAATTTATCCAGAGAATACTGGTTATTTGGGGCTCTGGACAGGCAAACCATTCAAAGCCATCTTAAGGACACACCAGACGGCACTTTTCTTGTTCGTGACAGTAATCAAAACCGCGGAATGAAGGCGGTTTCTATAATGTTTAATGGCGCAATAAAACACTGTGTAATTGACGAAGGACCAGAAGGCTATGGTTTTGCTGAAGGTTTTAAGACTCACGCTACTTTACAAAGTCTTGTACAGTATTACCATCGCGTATCTCTTCAAATGCACAATAGTGGCTTATCAACAACCTTACGTCTTCCTGTGCGTTGCGTGAAACCAAACATTCCAGTCTATCGGTCTGGATTGATGTAG

Transcript

Ppa0G102180

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8UUU2	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Xenopus laevis OX=8355 GN=pik3r1-a PE=2 SV=1
P26450	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Mus musculus OX=10090 GN=Pik3r1 PE=1 SV=2
P27986	Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Homo sapiens OX=9606 GN=PIK3R1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003700 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF16454 all species →	PI3K_P85_iSH2	Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR032498 all species →	Domain	PI3K regulatory subunit p85-related , inter-SH2 domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45818 all species →	PROTEIN VAV	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02649	PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.