Gene detail

Detailed information of Ppa0G112210 in Paragorgia papillata

Genomic Location: Contig00132:1591730...1618259
NR annotation: XP_028397748.1, chitin synthase chs-2-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G112210

ATGGGGCCCTTTTGGAATTACATGTGGGTGAATGTTCTTTGTAGTTTAGCTGTATACCTTTTGGGCTATTTGGCTTGCAGTATGGGTCTCCAACGTGAAGCGTTTGCAGCGCCTCTATTATTGGTCACTCCAGTGTGTTTGTTTCTTTCTTCTGCTCACTGGGCATGTCAGTCTACTACTATTCGTTCTTTATGCGGTGAAGTAACTGGCAGCGACCATTACCATGTTCTCATAATCGCTGCTTTATTTTGGATCGGTGCCTTGTTCTATGTTGTGCTGTACATTTGGAAACCTCAACAGGCGAAGATGGCCTCAGAAAGGGATCTTTTTTTAATTCCTTACAGTTATAGCGGGGTCTTTCTGGAGCAGTATCTGTTTATCAATAGAGAAGACACGTTCGTTCATCCTTCAGATATAACTGTGCATCCCTACAATCAAGCCAAGGCGTTCTTGTGCACCACCATGTATCGAGAAGATCCCGACCTTCTGAAGCAATATCTTCAGTGTTTGACCCGTATGTACGGTTGCCAGCGCAAGTATACCAGCATAGAAACTCACATTGTGTTCGACGATGCGTTTACGGCCAAGCACTCGCTAAACGAACACGCTCAGACCTTTGTTGATCTTTGTAAAGATATATTGAACGGAACGGATGGAAGCTTTCCACAAGCAGTAAAGATGCCGTATGGAAGTGAAATTGTGATAACTTTGGAGGATGGGGTCCAAGTGTACATACATTTTAAAGACTCGACAAAGGTGAAGAAAGGGAAGAGATGGAGTCAACTGATGATCATGTCATGGATAATAGACACCAAAAAGGATAGCATTAATGGTCTAGATAATACGTATTTCTTCACGTGTGATGCCGATGTTTCTTTTACGTATTCTTCGATTGAGAGATTACTGGACAACATGATTTGTAAACCGTATGTTGGTGGAGCAACATGTCGAATCCACGCAGAGGGATCTGGACCAGTTGTGTGGTATCAGGTGTTTGAATATGCCATGTGGCATTGGTTAGTCAAGGCTGCGAACAGTGTGATTGGATCCCTTCTTTGCTGTACGGGATGTTTTAGTGTGTTTCGTCTTCAGGCCCTTTCTGAAGCGCTACCGGATTTTTCCAGGCCAACAAGAAATGGAGCAGAGTACATCAGAAGAGATCTTGGTGAAGACCGCTGGTTAAGTTGTTTGCTGCTTCAAAATGGTTGGCTTTTGGATTATTGTTCGTTGGCTGAAGTATCAACCATGTGTCCAGAATCATTTGACGACTTTTTCCAACAAAGACGACACTGGATTGCCTCGTCGTTTGCTAACACATGCGCCTTAATTAAGGGCTTCAGGAAACTACGTCATTATAACAACAGACTGTCCGTGTTTTACGTTATTTATCTCGTTGCCACAGTGTTTTTTATGATAGTAAGTCCTGCTGTAATGATCTGGATGATTACTGGTACATTATACTATATTGCAGGAAGTTCTATAATTCTATTAGGGATCGGGATTCCATTCTTAGGAATAATGTTGATCTACATGGCAGCTTGTCTCTTCGCACTGCCTGATTTTCATCGTGCCTTTGCCAAAGGAGTGTCATACATCCTGTCCATCGTGGTCTTCATTTTAGCACTTGTAGCGTTTATTGATGTGATTAGACATCCTAAAAAGACCTTAGGTTCAGATGATCCAACATACAAGCTTGATAAAGAAATGACGATATCTGTCTCCTTACTTTATCTTATTATTTATGCCGGCGTGTTTATCATAACTGCCCTCGTCCATCCTAAAGAAAGCCATTGCTGTCTGCAGTCGTTGTGGTACCTCATGTGTTTGCCAGCGTTTAATATCTTTTTGGTGACGTATACTGTGTGTAACATAAGTAAGAAAGATTCAGAATCGCCTGATGATAATGTTGGTTGGTATCTACGATTTTTAAAATATATGTGTGGTAATAAAAGGCCCAAGTCGCCACATTCAGTCACATCGTATTGGTGCAGTTGCTGTTCAAATGCCACCGATGCCACACTTTCTGAGGCAATTGATATTGATCAACCGGAGATGTCGGACAAATGTGAAGGTGTGGAAGATTCTGATTTACCATCAGATGAAGAAGACGATGCAAGCGGAGAATTGATGGAACAAGAAATCGTTGACATTGGTACGTCTGAACAACGGCAATATTGGAAACAGCTTCAAGAAGCAGTCCTTGTACCTTACGACGAAGTTGAACTATCTGTTCGTCAACGACAATTGTGTCACATTCGTAATGGCGCCCTCCTGGCCTTCTCGATCGCCAATATCCTATGGTTCATTGTTGATTATGGTGCAGTTCTTGCCAGTCCTCTGGGGCTTGCCTCTCTTACTCTCTTCACCGCTATTGTGATCATTCAGTTCGTTGCTATGTTATATCATCGCCTGATGACCGTCGCTTACGAGCTCTCCCGGGCGACTTTCTTCCCAACATTACCAGAACAACAACGACCTTTACAAGAATTGCCTTCCTTACCAGAGGGCTGGTAG

Transcript

Ppa0G112210

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5ECD6	Chitin synthase chs-1 OS=Caenorhabditis elegans OX=6239 GN=chs-1 PE=1 SV=1
Q8T5G8	Chitin synthase OS=Meloidogyne artiellia OX=42426 PE=1 SV=1
A2QC57	Chitin synthase csmA (Fragment) OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=csmA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03142 all species →	Chitin_synth_2	Chitin synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004835 all species →	Family	Chitin synthase	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22914 all species →	CHITIN SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004100 all species →	Molecular Function	chitin synthase activity	Interproscan
GO:0006038 all species →	Biological Process	obsolete cell wall chitin biosynthetic process	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan
GO:0030428 all species →	Cellular Component	cell septum	Interproscan
GO:0071944 all species →	Cellular Component	cell periphery	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00698	CHS1; chitin synthase	EC:2.4.1.16	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.