Gene detail

Detailed information of Ppa0G117780 in Paragorgia papillata

Genomic Location: Contig00143:1497692...1507043
NR annotation: CAB3998528.1, DNA-binding SMUBP-2 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G117780

ATGGCGGACGTCAACACATTTGTTGAAGAAACGTTAGAATTGCTGAATTTGGAGCGAGAAGCAGAAATTACAGAAGCTAGAGCGTTTTGTGAAAGTGCAGATAGTGCTACCTTAGAGAAGAGAGGTGTATGTTTAAGAAAACTGGTTATTTTAAGTCGAAAAACTGGTTTGTATGGGCGAACTTTATTAACTTTAGGCAAAGCAAAAACAGCACGAAATGTTGCTCAGTCGTCTTTACCAGCTCACCGTATTACTCCAGGTGATATTGTTGGCCTTAGTTACTCATCTGGTGACAACAATGTTTCTGAGTTGGCATCTGGGATTGTTACACGAACATCATCTTTGTCGGTAGTGGTTGCTTTTAATGAGTCACTTGATTCACAATCATTTGATGAAGATGCTTTACTGAGGGTGACACGCTTGGCAAATGACATCACTCATAAGAGAATGAAGAGGGCACTCGAGTCTCTCTGTAACCTCTCATCGTTTCCTTGTTCTCATTTGGTTGATGTTTTATTTGGATGTGTGCCTATGGGTCAACCCCTTAATTTATCCAGCCTTCAAGGACAGCCTGAGACACCTGAAAAAGCTGTTTTCTTTAATGAAAATCTCAACCAAAGTCAAAGAATGGCTGTTCAGTTTGCCTTGACTCGAAGGACATCACTCGACATATGTACGCATTGTGCACTTATTTTTTCTTTTGTGCAGGTTTTGACTTGTGCTCCTTCAAACATTGCGGTTGATAATATTGTGGAAAGATTAGCAAAGCATAAAGTTAAGGCTGTTCGTTTGGGTCACCCAGCTCGAGTGTTGCAAACAATTCAAAGTTATTCTCTTGATGCAATCCTTGATTCCTCAGATGGAACTGCTATTGTTAAAGACGTGAGAAAAGATATTGATACGGCACAGAGTAAACTCAAAGTGTCTCGAAGCACAGGGGAACGAAGTCGTCTTCGGATGGAGATCAAGTCATTACGACGAGAGTTAAGAGAGAGAGAGGAGAAGGCATTAAAACAGATTCTACTGAATGCTGATGTCATTTTATCAACAAACGTTTCAGCTTCTGAGGATGGACCTCTAAAACATGTTCCTCGGGACCACTTTGATTTGGTTGTTGTCGACGAGGCTGCTCAGGCGCTTGAAGCTGCTTGTTGGATACCGTTGCTATGGGCATCACGTTGTATTTTGGCTGGAGATCATCAGCAATTACCTCCAACTATAGTGTCTCGTGAAGCAGCCAAACGAGGATTGGAAAGGACATTGATGGAGAGAGTGATAAAACTTCTTGGAGATGAAGCTGTGCACATGTTAACCACACAATACAGGATGAATGAGACAATAATGCAGTGGTCCTCAGAGCAGTTATACAATGGACGATTATCAGCAGATGTTTCTGTTGCTCAACATTTGTTACGTGATTTACAACTAGTCAAAGATACCGAGGTTACGGCCGTTCCTTTATTAATGATTGATACCGCTGGCTGTGACATGTATGAACTGCAAACGCCTGAAGAAGAGTCCAAGGGGAATGAAGGAGAAGTTGCAGTTGTAGTGCAGCATATCGAAGCACTTGTCAACAGTGGAGTGAAACATAATGATATTGGAATAATTACACCGTATAACTTGCAGGTTGAACTTCTCAGATCTTGTTTATCGACTAAATACCCAGCGCTGGAAATCAAATCAGTGGACGGTTTTCAAGGACGTGAGAAGGAAGCCATTGTAATATCACTTGTACGCTCCAACAATAAAGGCCAAATCGGGTTTCTGGCTGAAAACAGAAGAATCAACGTGGCTGTAACGAGGGCACGACGGCATTTAACGGTTGTTGGCGATTCCAGTACGGTCAGTCGCGACCCGTTCTTGAACTCACTTGTCGAGTATATTAATGAAAACGGTGAGGTGTGGTCAGCGGAACAATACCGGTGTCAAATGAGTGGAGATTGTGTTGTACCAAGGACTAGTATTAAAAATGCCACGAAGCCAAAGAAACGAAATGAAAAAGCGAACAAAGAAAAAAGTCGCGAAAAACATGGGAATAAAAACAATGATATAAATAGCCATCAAAATGAATCAAGGAAGCTTAAAGAAATTCCTAAACATAACTGGAAAAAAGAGAAGGGGATTCATAGGGATATGAGGGACAATGATGTACTCGAGGAAGGAAATGAGACAAATAAGGATAACGAAATGAAACGGAGAAAACTGGAAGAAGAGATTGGGAATTTTGTAAATGATTTTACGAGAACTGAGTTGGAGTTTTCTACGAAGTTGAGCTCGGAGGAACGTTTTATGGTTCATTGCATTGCGGAAGAACTGGGACTCACTCATGTTAGTAAGGGGACTGGAACTGAGCGATTTATTGCAGTTACCAAGACAACGACGTCATCTGATGCTTTTCCGAAGGATGTCGACGTAAAGCGAAAGAACGAAACAGCCTCTTGTTCTATCTGTGGTAAACTGATCCCATTGTCCAACCTCGACTTACACGAACTGAGATGTCAGCGGGAAGAACAGCAGGCACAGAAGGGTGTTACAGACAAGGCAACTCGGTCTGATAAAATCAAAGCAAATAAAAAGAGCAAGAAAGCGGCTATCCCGAATGTCCTGGAAAAAGACGACGGCGACGATAAGTTGGACGATCTTTTGGCCGAATTCAAGCGTAAAGACTCCGAGTGTGCTTTACCGGGGTGTAAGAAGAGCATTTTGACGGTAGGACAAAAATGCCGGTGTTGTACGAATACATATTGCCTTGGACATCATATTCCGGAAGTTCATGGTTGTACCCAGGCCGCAAGAGAACGCGCAAGGCGCGATGCAAAGGCTTCTGGGAACAGTAGACAAACGTCAAGCAAAAGTGTGGTGAAAAGAGCGCACTTGCACAGGAGACTGGAGAACAAACTAAAAGGTCTTGAAGGAAAGCGAAAAACGCAACCAAATCAAGACGACAAGAAATAG

Transcript

Ppa0G117780

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQN5	DNA-binding protein SMUBP-2 OS=Rattus norvegicus OX=10116 GN=Ighmbp2 PE=1 SV=1
P40694	DNA-binding protein SMUBP-2 OS=Mus musculus OX=10090 GN=Ighmbp2 PE=1 SV=1
Q60560	DNA-binding protein SMUBP-2 OS=Mesocricetus auratus OX=10036 GN=IGHMBP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21138 all species →	SMUBP-2_HCS1_1B	Helicase SMUBP-2/HCS1, 1B domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF01424 all species →	R3H	R3H domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048761 all species →	Domain	Helicase SMUBP-2/HCS1, 1B domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR004483 all species →	Family	Helicase SMUBP-2/Hcs1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G117780.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.