Gene detail

Detailed information of Ppa0G118090 in Paragorgia papillata

Genomic Location: Contig00143:1789421...1798345
NR annotation: XP_028399663.1, deubiquitinating protein VCIP135-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G118090

ATGGAGGAGGAAGACGACAACGAAGCCAGGATATTTTGTGGCACTTGTCCAGACAGCCATTGTGGAAATGTCCTATATTTTATGTCCAAACAATCTGTTGGAGTTGATTGTACAAAATGTGGCCAACGACATGCGACTGGTGCCCTTCTTAACATAAAGGAAACAAACAGTTCGAGTGCAGCTGTTGGAAGCTTGTTAAAATCGATGTTATTGAACAACTCAAGGACACGGAAAGGTACAGAACTTGTAAAAGTACGGGGACTATCTAACTACCACTGTAAATTAGTCTCCCCGCTTTTGACTTACTATGGAATGGATAAGAACAGCGGCAAAGCGAAGCTGCTTTCTGAGTTGAAACAACCGGATGTTTTTGATTGTTCGCTGTTGGGGAATCGGGCCTTCCTTATTGAGAAGGAACACTTGGAGATCGATGGTTACGGAAAAGATAAGACGGGGTCTTTAAGTTATCTCAAAGATACCTTAGAGTTAATAAATCAGGCAAATGGTGGTGAAACCTTGCTTGTTCCCCTCCACGCAGATGGGGATGGACACTGTCTTGTTCATGCTATATCTAAAGCTGTCGTTGGAAGAGAACTATTGTGGCATAGTCTCAGGCAGAATCTACGAGATCATTTAGAGAAGGAAAATGTACAATACCAAGCATTATTTCACGATTTTATCGACCAAGATGAATGGAACGATATCATTGCTGAAGCTGATCCAGATTTTCATCCCGAGACCAATGAGCCATTTGGTTTGCGCAATATTCATGTATTTGGTCTTGCGAATGTCCTGCACAGACCCATTATCCTGTTGGACAGTACAGAAGGAATGCAGTCGAGTGGTGATTACTCTGGGATTTTTCTACCAGTGCTTTGCCCGGTAGATAAATGCAAGTCACAAGGTGTTATCAATAAGCCTCTAGCCATTGCTTGGAGTAGCTCGGCACGAAATCACTATGTTCCTCTTGTCGGAATCAAGGAAGTTTCTCTTCCAAAGATTCCTCGTCTACTCTTGCCAAAGGCCTGGGGAGTACCTAATCAGCTTGTGTCAACATATGTTGATTTTGATGAACATGGTTGTTCCATGATTGGTGGATCTCGAAGTTTACCTGAAAGCTACGTGGAACGGTTAGTTTCTGCAATGGATGAGGTATTTTATGAAAAATATCAGATTTCTCCACAGCTTGTGGCTGATGTGAATCAGTTCATATGCAAGCCATCGAATGCTGTGGGTGTTTCATTGGTGCAGGTTACAGAATTTGCCCATCAGGCTGTGGAATCAGGCACCCTGTATCGATGTTTGTCATGTCAGGCAGTAAAGGAAACTAAGGAACAAGTTCCTCAATCGTGGAGAGTACCTGGAGGGAAGTTCTATAAGATGGTTGAAGAGACTTCAACTGGACTCGTATCTGATGCAGTTTACACTTTCCCAGAAGCTGAAGGTGAAGCATTTATGTATAATGCTAAAGAGGATATGCTGAAGTCCATTTTTACACAGCAACTGATGTGTGACCTGTGTAAGGGTGTACTGCGTCAAGTGTACGCTGATGGTACTGTCAAATATGTTAATGGTGATCCTACCTTGACCACGACTAACACAACAAGAGGCTGTTCTTGCGGATTCAAGCATTACTGGGATGGAAAAGAGTATGACAACTTACCAAAAAGTTTCTCTGTGCCTTTGGAGTGGAGTGGCAAGAAGGTGGAAGAAGAAATATCTTGGTTTGAATTGGAGAGTGATCCCAGTTTGAATTCCAATGCATATGAGATTGCAATTGCTCTTGTTCAGAAGCATTTTCCTGGCGAGTTTGGAAGCGAGGTTCTTGTGAGAAAAGTGGTAGATAAGATTCTTCAGGAGACTGCCGTGAAAGGAAGTCACAAAGCGTTGCCGCATGTTATTAGCACAAAGGATGATGAAGAGATGACGATAGGTCATAACGAAGCTCCTCCTTTAAAGATCATACTGACAGGGCCAAAGAAAAAGACGTTACATAAAGAGGAACTGACGAAAAGCGAGTGCGAGGAACTGATAAGAGCCAGAACAACACATCATGCCGCTTACAGCCAGAAAAGAAAGAGTGCAAGAGAATCTCCTGAAAAGGCCCCAGGAAGCTCAAAACTAGGAAAACAAGAGGTTCCTAAAGGTAAAGAAAAGGCAAAACCTACGTCCCTGTCCGGGGTGAATGTTCCTGGGAACTCTGAGCCACGCACTGTCGTTGGCGTGCCGAGTAAGCCACGTGACCGGAAGATCCGCCTGTCGAGTACAGATGGCAAGCAAGCCACGGTGACGTTGAATGCAACTGCTACATACGGGGACCTTCAGGAAGCCTTCCGGTATGGGTTTCCACCTCGGGAATTGCTACCCCCGGAGGATGGGAACGATGTACTGCCTTTGACACACGGGGACCGAGTGGCGGTGGAAGAACTGCCTGAGAAAATGGATCATCAGGAGCAAGAGATACCACCGGAGAATGCACCCCCTTCGGGAGTCATGGAGACAGCTGCGGCGTCTTGGAGTGATGACGAATTTGAAGGCTTAAATCGTGAGCAAATTGCATCTGAGTTGATGAGCTTATTCAGAGGAGCTTTGAACGTAGACAGATGGGAGACGATGCAACATCAGCCAGAGTTGTTTTCATATGGTGGATATATTTACAAGAAAGTATTTAAAGAAGTAGGACCTCTCCGTGATGATCAACACTGCAGTATTACTGAATTGCCAGGAAAGACTTTTGCCTACAACGCGAAGGAGGACCGACTCGAACTGTGCCTGGGTAGAGTGCACATTCCCGTACAACCTCTAGACTCGGCAACTTTAGCCCGAGCACATGCTCGTACCGGAACCACACAATCCCTTGGACCATTTCAAGCTTCAACGTCACAGGATGACGAGCCACAAGTGCTTGGAGCCTTTAGTGGTGCATTACATCACCGAGATGCTGCCAAAGGTCGCTCGGCATTCTCTGGAATGGGGAGAACCTTAGGAGGAAGCGAGAAGACTGAGGAAGAGAAGAAAAGACGAGTAGGTGCGCCAAAAGCTATGAGTGGTGCGCCAGAAAAGACGAGTGGTGCGCCCAAAGAGATGAGTAGTGCGCCTGAAGAGATGGGTGGTGCGCCAGAAGAGATACCCGTAGAGATGAGTGGTGCGCCTGAAGAGATGAGTGGTGCGCCAGAAGAGATACCCGTAGAGATGGGTGGTATGGCCGAAGAGATGAGTGGTGCAGCTGAAGAAATGAGTGTTGTACCTGAAGACACGAGTGGTGCACCAACAGACACGGGTGGTGCACCAGAAAAGGCAAGTAATGTTTACGGAACATCAAGTACACCACATGAAAGTTCTAGCATTGCACAAGAAATACAGAATACTGATCACAACGTTTCAAGTGTCAAGCACGAAGAATCAACCACCATAAACAAAACACCGACTGTTACACACGAACAACCAAATACTCCACAAATACTTTCAAGTCACGTCACGTCTGAGGGAAGTAGAAATTCAGAGCATATTGTAAGTGAAGATCTTGTATCAGTTGCTGATGAAGAAAATCCTCCTATGGACACGACATCTGCCGATGAAAGGGAAGACATTGATCATCTGGGGATAGTGAGGGACACAGGAGATGAAAAGCAAGCAACGGGGGATGATGGGCTTAAGAAAGGGGTAGGAGGGGACTCTTCAAAGGATGATGACCAAATCAAAGGGACACCAGGGGATGTTTCAACGGAAGCTGATCAAGTCAGTGGGATAGCAAGGACACCTTGA

Transcript

Ppa0G118090

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96JH7	Deubiquitinating protein VCPIP1 OS=Homo sapiens OX=9606 GN=VCPIP1 PE=1 SV=2
Q8CF97	Deubiquitinating protein VCPIP1 OS=Rattus norvegicus OX=10116 GN=Vcpip1 PE=1 SV=2
Q8CDG3	Deubiquitinating protein VCPIP1 OS=Mus musculus OX=10090 GN=Vcpip1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006707 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF19437 all species →	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039087 all species →	Family	Deubiquitinating protein VCPIP1	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR045827 all species →	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843 all species →	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320 all species →	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0035871 all species →	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168 all species →	Biological Process	Golgi reassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11861	VCPIP1, VCIP135; deubiquitinating protein VCIP135	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.