Gene detail

Detailed information of Ppa0G118150 in Paragorgia papillata

Genomic Location: Contig00143:1879002...1894650
NR annotation: XP_028399705.1, rho family-interacting cell polarization regulator 2-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G118150

ATGGGCAAAGAGAAAGCCGCCCTCCCCTATCAGCCATATCAAGGTTTTAACATCAATAGTATGGCCAGTTCTTCTCAACAACAACAATGTATCAAGCGAAACTCCACGTACAGTCCTCCCACCAGAAGTCAGTCTATGTACATCCAAAAATCTGGCCTTGATGAACCAGAAATCTTGAAGCGTCGTGTTTGTTCAACCAGAGGAGGAAGATCAAGAAAATCAACATTGTTTTCCAGTCGCTCAATTCCAAAAATTCCTCAGATTGAGAACTCAGTTGATTTGTTTGAAAAAGCAAAACGAAACCTTGAACATAAACTACGGTGGTGCGAAGAAAGATTAAGTCAGATCGATGGACTGTACGAGTTTTATAAGCATGAGATTAAAATGCGACGAGGTGCCAGGAACCTTGAAACAGCGCTCTTGTCTTACGGGGTGAAACATGGTCAAGATAAGTGCAAATCAAATTACAAGGAGTCCACCCAGAACATGTGTGAAATTGAAGATGAGTTTGAGAGAAGAATGGGGAGATTTAAAGTAAAAATGGATGCGCTTGATGGATTTGCTCGACTTTGTCCTGGAGATAACTTTGAGATCTACATCAGGAATGGGAATGGTCGCAAATGGAAAGCAAGATGTAAAATTGAAAGAGAGGGACAAAAATGGACTGACAATGATGTTGAAATCAAAGGTTCTGTCAAGGATGGTTTATTTTTAAGAATAATCGAGGTGAAAAAAATTCAAGCAAATTCTCAGTTGGGGAGTTTTTCAGTACGCTTACGAAATTATATCACAGCTCGTCCTATGAATCTCTCTATTCCTGTAAATAAAGCTGGAAATTTAAAGCTACGGGTCACGATACATTGGCAACCTTTGTCAGTGAAAGAGGAATTAAAGATCAAGAAGACGAGTCGTGAAGGATTACTATCTGAAGTATTCTTTGGTTCAGCGGTGAATATTTCTCATGAAGAGCGTCCAAGGATATCAATCGAGACTCCTGAAAGCTTCTCTCCTTCTTCGCCATCTGCTTTCAACGTCGACGGAAAAAATAAACGAAGACAACCCCGAACAAGAATTATCTGTGAAATTACTGTAGCATATGAAGAGCTTGACATGGAAACTTCGTCTACTAAACCTTCAACACTAGATCAACTACTACGAAAATTACAAAGTGTACTCACACAGCACAAAGAACAACATCCTCAACTTCAACAATTACATGAAAAACTGGAAAAACTAGATGCAATATTACAGGGTGGTAAACTAAGAAGAGGAAATTTATCAGGATCCGTGGAAAGTGCTTTAGAAAGTTTTAGTTTTCTTGATATAACTGAAGTAGGTATAAAGCCAGATAAAGAGCTTCGTCCATTCGACACTGGCTACTCTAGTAGTACTGAAGAAACACAGAAGCTAGAACATAGTCAGATGAATGGCGGCGATACAGCTGAGGAGATCACTGCTGATGCAATGACAGAAGAAGTAACACCTGAAGAGAATGAAGTCGGGTCATCGAGTTCTTCTCCAGGTATGCAAAGAACAATTATTAGAGACTTTATAATTAACGTATTAAAACAACACTTGAAGTTTTGTCTTCGATTGACAGAGTATTTGGGTTCCATTGGTCCATTAAAATGCAAGGAGACATCATCAGTAATTAAACTTGAATGGCAATGTGGTATTCTAGAGAAATTAATGGAGCTAGCAAACGCCAAACAACCTCCACAAACAATATCTAAAGCTTATTCGCCACTAGCAGCGAGTGGTCATGATGAAATATTACTTTTCTGGGCTGGAAATTGTGGCGAAAATCCTTTATTTATTCATTGTAACGACTTTCTGCAAGCTTTGAAAAATCAATTTCATTCTGGGATTGAAGAAAGCTACAGCCGTGTGACTGATCAACTGTATCCAGTGATCACGACTAGAATTCTGGAAGAAAATGGTAGTTTGCTAACGCCAAATATCGACGAAGATTCCGTTATTTCTATTTATCAGTTTACAGATTTCTTCTTGTTAGACCACAGGTGGAATTTGGTGCAATTTGTTGGCGATGTTGCTGATGAATTGTTAACATGTGGACGTTTAATGAATACGGACAAACATGTTGTGCTTACTCAACTTCAGATGTACAATAAAATCCCGTTCAAGCAAAGTTGTTGTGTAACTGCAGCCAGGTTACTAGCTGATCCCAATCCAACGATCGCGGATGCAGCAGGTCTCTACTTTGAAACTCTTTTAAAAGATGTTAATCGTAAAGCTCAGGCTGTTTCCTATTGTACCGAAGCACTGGAGGATGGCGATGAAAGTCTTCGTATTGGCGCGTGTACAGCATTGGGCAGACTTCAGGGTGAAGAGGTTGGCGAGCAACTTCTCTTCTTAGCGAAATGCGACACAGATCAAGTGAAAAAAGCAGCCGAATTATCTATCTCTACTTTGGGAGCACATTTCAAGCCGAGCGATGACGAAAAGAACGCCATAATTTGGCAACAAACGACGGTTATGTCAGATATGTCGAAAAGTACGGATTTTTAG

Transcript

Ppa0G118150

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7M3	Rho family-interacting cell polarization regulator 2 OS=Bos taurus OX=9913 GN=RIPOR2 PE=2 SV=1
Q5F3L9	Rho family-interacting cell polarization regulator 2 OS=Gallus gallus OX=9031 GN=RIPOR2 PE=2 SV=1
Q80U16	Rho family-interacting cell polarization regulator 2 OS=Mus musculus OX=10090 GN=Ripor2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003663 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15903 all species →	PL48	Filopodia upregulated, FAM65	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026136 all species →	Family	RIPOR family member 3	Interproscan
IPR031780 all species →	Domain	FAM65, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15829 all species →	PROTEIN KINASE PKN/PRK1, EFFECTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for Ppa0G118150. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24818	RIPOR, FAM65; Rho family-interacting cell polarization regulator	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.