Gene detail

Detailed information of Ppa0G118670 in Paragorgia papillata

Genomic Location: Contig00143:2462253...2494079
NR annotation: XP_028399687.1, ABC transporter G family member 28-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G118670

ATGGAGAATCGAAGAGAACAGTGTTTTCAAAATCAACTGGAACTCGCTATGTACGAATATCCCTCGCTTACCACACTCCGACATCATCCAAGAATGGATCCTTATGATCAACAATTTACTAGTGAATACCCAAAAAGGGCAAGAATGGATTGGGCTAGTTCAAACGGGAATACAGGCTCCTATACTGCTCTAAATCACATCAACTATCGTCTGCCTCAATCTCATTATAACGCAGAACATCAACTTAGTCACAGACCTGTTAGTTCATCTGCTTTACCCACTTCATCAGAAAACACATTCGCTGCCCATGGTGCTTATTTCCCAGCTAAACATGGACAAAATGTTCAGCTTGGTCATCCATTTACATCAACCACTCATGAACAATCCATCAGTCGAGCCTTACCAATTAGCCCTGCCCCCTCACCAACTCCACCTGCGGAAGAGCCTGTTGAAAGACCAGCTGGTCGACGGCTAACACAGGTAGCTATGAGAAAATATTTAGAAGACTTATCTAACAATGAACTGCTAAACCAAACTGTGATCATTCTTCATGCAAAAGTTGCTCAAAAGTCATATGGAAATGAAAAAAGGTTTTTTTGTCCTCCACCATGTGTTTATTTGGTTGGTCAAGGCTGGAACTGTCGACAAAGTTACCATGTGAATGCAAAGGAGGAAGACAAAGACTCGCAAACTGTTGCATTTATTGGTATAAGTAGTGGGAACCACGGTGAACATGAATATCAACAATTATCTATGGAAGATCGTCTCATTGACAAAAAATATTGCTATGGTGCAGCTAAAACATTATTTATTTCGGACTCTGACAAGAGGAAAAACTTTGTATTATCTGTAAAGCTGCATCATCAAAATGGGGATGCTGTTGGTGTATTTAGCTCTAAGAGAATAAAAGTCATATCTAAGCCTTCTAAAAAGAAGCAATCCTTGAAAAATACTGAATTATGCATTCAGTCAGGGACAACTGTAGCACTTTTCAATCGTTTACGATCACAGACTGTCAGTACGCGTTACCTTCATGTTGAAGACAAAAATTTTCGAGCAAGCAGTACACAATGGGGAGCATTTACGATACATTTACTGGATGACGAGGAAGAAGAAAGTGAAATGTTTACTGTAAAGGATGGTTACATACACTATGGGGCTACTGTTAAACTAGTATGTTCTGAAACAGGCATGGCGCTTCCAAGACTGATTATTCGAAAAGTTGACAAACAAACTGCTTATCTTGATGCAGATGATCCTGTCTCTCAACTCCACAAGGTCGCGTTTTACATGAAAGGTACTGAGAGAATGTATCTATGTTTATCCCAAGAACGCATCATTCAATTTCAGTCAACGCCTTGTCCAAAGGAACCAAAAAAAGAAATGATTAATGATGGTGCTTCGTGGACAATCATTAGCACAGATCGAGCAGAGTATACATTCTATGAGGGCATGGGTCCAATTGCCTCTCCGATCACGCCAGTCCCGATAGTGTCCAAGCTCCAGTTGAACGGCGGAGGTGATGTAGCTATGCTGGAACTCACGGGACAAAACTTTACAGCGAATTTAAGAGTTTGGTTTGGAGAGGTGGAAGCAGAAACAAGTTACAGATGTGGCGAGAGCCTGGTGTGTCTTGTTCCAGATATCTCTGCATTCCAAGGTGCTTGGAAGTTTGTCCGTCAGCCAACACAGGTTGCTGTGAGCTTAGTACGGAATGACGGCATTATTTACCCAACAAACCTGGCTTTTACCTACACGCCCGAAGCGGAGGAACAACCACGTTGTATTGAGGCAAAAGTTATTCGAAAAGGATTCTCCTCCTCTACTACTAACTCTACAAGATCGATGACAATTCCTACTGGAAAATGTTGCTCTCGCAAGGATGCCAAATATTGTTGCTCTGGTATTCCAATATGCCCAGATGGGGAAAATGTCACTGAGGTACAACGCTATGCTCCAACTTCACCGTGTAGTTCACCGTGGAATCTGAGTGCCTGTGAGGGTGGTTTTTACACCACAGATGGAATAAACACCTTACAATGTCCTCCAGGATATTTCTGTGAAAACTATACTATTTGTTTGAAACCTTGTCCAATTGGTGCATACTGTATTCAGAATGAATTGAAAACTGGCAATTGCAGTTCATATCAGCAGTGCTGTGTTCCTTCTAACAGTCCTCCAATCTTTGACATGGACAGTAAACAGCTTATTTGTGCTGGTAATTATTATCCAAGTCGTTGTCTGGCTGGTAATTATTGTCCTAACACAACGTCCATGTTTAAATGTCCTTCTGGACATTTTTGCAGAGAAGGAAGTCAGAGAGCAGTAAAGTGTCCACCTATTTCTCCTTGTGGTACAGGTGAAACGTCTCCCAATACATTATATGTTGGTCTCATTGTCAATGGTTGCTTACTTTTTGTATTTCTATTGGTTCTCATTTACTTCAACAATCGACATGCTGTCAACTTTTACTGTGGTTTATATAAGAGACGGATTACTGGCACTCGAAAGCTAAGCCAAAGATATAATCTAGCTGATGGTATACGCCTGGCTATAAATCGATTGCCCAAGGATACTTCAAGAGATGAACTACAGCTTGAAGCCAAGAGGGTTACTTACAATATCAGCTTCAATAAATTGAGCCTGAAACTAACTTCAGGTACAAACAAAGGCAAAGTTCTACTGCAAGGAGTTACAGGAGAAATAAATGCTGGGGAAGTCACAGCTGTACTTGGTCCATCAGGGGCAGGGAAAACCACATTTTTAAATGTCTTATGTGGAAAGGCGTACTATGGGGTATCTGGGGGAACTATAAGAATCAATGGTAAAAAAGTGAAAGGTATTCAAGACTATAAAAGCCTTACTGGATTTGTTCCCCAGGATGACATCATGCATCGTTCCCTCACAGTCTATGAAGTACTTTACTACAATGCTTTGTTACGTCTACCTCCTCAAAGTGATCCAAAATATTACAATAAAATGGTTAAAAGTGTCCTCAATCTGTTGGGAATCCGCCATGTTGCTAACACACAAATCGGAGATGAAGAAAAACGAGGTATCTCGGGTGGTCAACGACGTCGTGTAAATATTGGAATGGAACTGGTCGCTGATCCAACTATTTTGTTTCTTGATGAACCTACAACAGGATTGGATAGTTCATCAAGCCTGGCTGTTGTCAAAGCGCTAAACACAGTTGCTTCTACACTGAACTTGACTGTGCTGTGTGTGATCCATCAACCGAGATTTGAAATATTAAAAATGTTTGATAAAGTATTGTTCCTTGGTCGTGGTGGTCGCACAGTTTATTCAGGTTCAGTTGAAAATGCCGAATCGTACTTTGGTAGAATAGGTTACCCTCTACCACCTTACGTCAACCCAGCTGATTTCTACATGGACGTGATATCAGGTTCTATAAAGAACCAAAGAAACATCTACACTGACCTGTTTCAAGAATGGGAAGATCATCAAATGCAAGTTACAGATGTAGTTGCGGAAACCAGCAGTAAAGTTAGCCCCGCTGCTGAACTCAGTGAACTAAACAATATTCGTCCTGGTTTCTTTACTCAACTTTGGATCTTCATGAAGAGAGAGTTTGTGTTGCAGCTTCATATGGCCAAGACCTTACTACTTGATCAAGTGTTGACCCTCATTGCTGGGGCTGTGTTGGGGTTGCTATTTAGAGAGGTCAAAATTCGTAATGTCCTTGAGTCGACGGAATTTGGCAATATCTCTGTCGGCCTCCTCGGTGTTGTTGCCGGAATAAGGAGTTTTGGTCATCATAGAGTTATCTTCTGGAGAGAGAGTGCAGCTGGCATTAATCGTGTCAGTTATTTTATTGCTGTGAATTTTGCCTACATTCCTATTTTGCTGATTTCTCCGGCGGTCTACCTGAGTATTTACTACAGCTTGGCTGCATTTCTTGCTCCATTTGGTGAACATTATTTGGTGTTCTTGTGTGCGTGGTTTTATCTTTCTGGTCTGGGTTATTGTATGTCGTTGATCTTGACTCCGAGAAATTCACAGATGGCTGCAATTATTACCGTCGTTATTATGGCCTTGTTATCAGGTGGCTCACCAGAGCTCTGCAAACTGGACGACACATTCATTGCTACGGCGTTTTATAATTTATCATTTTCAAGATGGGTGGCCGAAGCAATCTTTGAGATCGAGGCCCACGAGAACTCAGAAGTATTAAGCGATATAATCAGCAGGGTCCAGATCGATAACCACTACGACCTGAACAGCTTTAATACTTGTATTATTGCTTTACTTTCAATGGGCTTTGGATTCAGGGTGATTGCATTACTACTTCTGTTGTTTACTAAACGCGGACAGCAGAAATAA

Transcript

Ppa0G118670

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06330	Recombining binding protein suppressor of hairless OS=Homo sapiens OX=9606 GN=RBPJ PE=1 SV=3
Q5RFK6	Recombining binding protein suppressor of hairless OS=Pongo abelii OX=9601 GN=RBPJ PE=2 SV=1
Q3SZ41	Recombining binding protein suppressor of hairless OS=Bos taurus OX=9913 GN=RBPJ PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003006 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20144 all species →	TIG_SUH	TIG domain	Domain	Interproscan
PF19055 all species →	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan
PF09270 all species →	BTD	Beta-trefoil DNA-binding domain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF09271 all species →	LAG1-DNAbind	LAG1, DNA binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR038007 all species →	Domain	RBP-Jkappa, IPT domain	Interproscan
IPR043926 all species →	Domain	ABC transporter family G domain	Interproscan
IPR015350 all species →	Domain	Beta-trefoil DNA-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR037095 all species →	Homologous_superfamily	RBP-J/Cbf11, DNA binding domain superfamily	Interproscan
IPR015351 all species →	Domain	RBP-J/Cbf11/Cbf12, DNA binding	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR040159 all species →	Family	Suppressor of hairless-like	Interproscan
IPR036358 all species →	Homologous_superfamily	Beta-trefoil domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10665 all species →	RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G118670.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.