Gene detail

Detailed information of Ppa0G119530 in Paragorgia papillata

Genomic Location: Contig00145:427324...428669
NR annotation: CAB3991682.1, Mediator of RNA polymerase II transcription subunit 9 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07544 all species →	Med9	RNA polymerase II transcription mediator complex subunit 9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011425 all species →	Family	Mediator of RNA polymerase II transcription subunit 9	Interproscan
IPR039242 all species →	Family	Mediator of RNA polymerase II transcription subunit 9, metazoan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20844 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15149	MED9; mediator of RNA polymerase II transcription subunit 9	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.