Gene detail

Detailed information of Ppa0G120270 in Paragorgia papillata

Genomic Location: Contig00146:795444...809908
NR annotation: XP_028396063.1, fermitin family homolog 2-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G120270

ATGTCTCGACAACAGAAATGGTTGCTTACTATATACGTGTCTGATCTGAACGTTGAAAAGACCCTGGAAGTCACTGGGCAGACCTTTGTGGGAAATCTGATGGTGGAATTGGTTAACAGACTCGGAGTATCGAGAGATTGGTCTGACCATGCTTTGTGGTGGCCACAGCGAAAGACATGGCTGCTACGTTCGCGTGTCACGCTCGACGTGTGCGGCGTACAAGCGGACTCGAAGCTTGAGTTCACGCCGAAACACAAGAACGTCCATCTTCAACTGCCCGACTTGCAGTTCGTCGACACGACCGTGGACTTTTCGAAGAAGGTCTTCCACGCCGTCACCGAGGTGTGCAATCACTTCGGAATCCGGCATCCCGAAGAACTCTCCCTTCTCAAACCCCCATCGCGACATGGCGACAAGAAAGAAAAGCGAACCCCTCGACGATTAAGCGCCAAGAGACAGAACTCTCAAGGGTCGGTTCACAGTGACAACTCCGAGGACATATTAACCCCTTCAAGTCCAGCAAGCACCGATGGAAGACTCGCTGTTCCCGGCCAACAGAACCGAACGGGCAGCCTGAACGGCAGCGCACACAGTGCTTCGACGCCTGGTTCACCAAAAAGCCATGGATCCTTCGACAGCAACGACTCCGAACACCATATTCTTTCTTCGAGCAGTGCACAAGGCGTGGAGACGCTTTACAGGGCCAAAACCTTGCAAGAAAAGGTTGTTTTTCATTCTGGGTGGCTTGATTCATCCAGATCACTTATGGAACAGGAAATAGAGGAAGATGAGCACTTGATGTTGAGATTCAAATATTGTTCTTTCTTTGACTTAAAACCAGCACTTGATGATGTAAGGATCAATCAGTTATTTGAACAAGCTAAATGGTCGGTTCGAGCAGAAGAAGTGGATTGTACTGAAGAGGAAGTGATGACCTTTGCTGGCTTACAGTTTCAAGTGAAGATAGCATCATCCTCACCACCTGTGGAGGATCCAGCTCAACAAGAACAAGATGATGATATTACAAGTGCGTTGAATGACTTACAGCTAACTTTGGAAGGAACAAGTTCTCCAGCATCCCAAAAGACTTTGAACAAGATGCCAGAGTTAAGTGACTGGTTGGTGCTGATAAAACATAAAATGTTAGGAATGAAAGACAAAAAGAAGTTTTGGTGTGTATTCCGAGATACCTACTTCTCGTACTACAAATCCAATGAAGCTACTATGAATGCACCTATTCAAAAAATTGACTTACGAGGTTGTGAAGTCTACCCCGAAGTTAATGTGCAAAAGGAGAAATACTGCATAAAACTGAAGTTTCCAGACCATGAGGAATTAACTGATCTTGAGCTTGGACTAACCAGTGAGGTTCAATACTCAAAATGGATGGGTGCATTCCGTTTAGCTTCCAAAGGCAAAACAATGGCCGATAGCTCCTACGAATCCGAAGTCCATGGTATTGAAGCCTTTTTGGCCATGCAACGCAACAAAGATAAATTCTCGAACGCAACTGCTCCTGGCGGTGTCCAAATTCAGCCTGAAGATTTTGTGCCTCCTAGAGTATTAAAGAAATACAAAGCAAAACAGGTTGCTGCCAGGATTTTAGAAGCGCACTCTTCCCTGAATCTGATGACAGTGATGGAGGCAAAAATGAACTATATTCGAAAATGGCAAGAACTGCCTGACTTTGGTCTTACTCATTATGGTGTCAAATTCAGAGGCGATAAAGTGTCCAAAAAAGAGGAAATGCTTGGTATTTCCGACAACAAGATTACCAAGATCGATGCCTCGAATGGCAAGATATTGAACAGTTGGCGATACAGTGTCATGCGCTCGTGGAATGTCAATTGGGAGACCAAAGAAATGATTATCGACTGCGAGGGCGAACGAATTCGATTTATTTGCACGAGTGCGGATATCAAAAGCATTCATGAATTCATCGGAGGATACATCTTCCTATCCATGAGAAAAGATGTCAACCAGCCCGTCGACCATGAACTATTTTTCAAACTCACCGGAGGATCCGTTCAATAA

Transcript

Ppa0G120270

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CIB5	Fermitin family homolog 2 OS=Mus musculus OX=10090 GN=Fermt2 PE=1 SV=1
Q96AC1	Fermitin family homolog 2 OS=Homo sapiens OX=9606 GN=FERMT2 PE=1 SV=1
F1Q8X5	Fermitin family homolog 2 OS=Danio rerio OX=7955 GN=fermt2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006685 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF18124 all species →	Kindlin_2_N	Kindlin-2 N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR037843 all species →	Family	Kindlin/fermitin	Interproscan
IPR040790 all species →	Domain	Kindlin-2, N-terminal	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16160 all species →	FERMITIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0030055 all species →	Cellular Component	cell-substrate junction	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17083	FERMT2, KIND2; kindlin 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.