Gene detail

Detailed information of Ppa0G120550 in Paragorgia papillata

Genomic Location: Contig00146:1146744...1155895
NR annotation: XP_028409774.1, SNW domain-containing protein 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R7R9	SNW domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SNW1 PE=2 SV=1
Q13573	SNW domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SNW1 PE=1 SV=1
Q9CSN1	SNW domain-containing protein 1 OS=Mus musculus OX=10090 GN=Snw1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007118 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02731 all species →	SKIP_SNW	SKIP/SNW domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004015 all species →	Domain	SKI-interacting protein SKIP, SNW domain	Interproscan
IPR017862 all species →	Family	SKI-interacting protein, SKIP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12096 all species →	NUCLEAR PROTEIN SKIP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06063	SNW1, SKIIP, SKIP; SNW domain-containing protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.