Gene detail

Detailed information of Ppa0G121830 in Paragorgia papillata

Genomic Location: Contig00152:574898...595058
NR annotation: XP_028403156.1, cysteine--tRNA ligase, cytoplasmic-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G121830

ATGATTACAAGATTTCGCCTTCTATTTTCGCGTTATCGTGTAATTCTGAGAAAATCCGGCTTGGATTATCAATCTTTATTGACTTCAAGACAGCTGGTGAATTCTTCAGCTGTACTGTGGTGTGACGAGATGAAGAGAACTTGGAATAAACCGGAAGGAGAAAGCGAACTTAAAGTATACAACGGTTTAACTAAAGAGAAGAATGATTTCATTCCTCACAATGGTCACTTAGTTAAATGGTATTGCTGTGGTCCTACTGTGTACGATGCTTCCCACATGGGACATGCAAGGTCTTATATTGCATTTGATATTCTTAGGAGAGTTTTTCAAAATTATTTTAACTATGATGTATTTTATGTGATGAATATTACTGATATTGATGACAAGATTATTTTTCGAGCTCGTCGAAATTTCTTAATGAAAAAATATAAAGATGAAGATCACTCTTTGGATGAGGTTCTGTCCGATGTTGATGATTCTCTCAAGAAATTTACCACGAAACTAGAGACAACGACAGATCCTGATAAGATAAATATGATGGAAAAAATTATTGAAGATGTAGGCAAAGCCAAACAATCTTTGACTGAGCTTAGAACTCAAAAAAACGACAACAGTGAAGCAATGAACGCAGGAAAGCAGGTTTTGCTGGAAAAAGCCTTTGATCCTTTGTCGGCATGGTTAGATTCTCAGTTTGGTTCTGGCATTAACGAGCATAAAATATTTGCTGAACTTTCCAAGCATTGGGAAGAGGAATTTCATAAAGATATGAAAGCATTGAACATTCTTCCTGTAGATTGTCTGACACGGGTGAGCCAGTATGTTCCTGAGATAGTCACGTACATTGAAAAGATTATTGAAAATGGCTTTGCTTACGCAGCAGAAGGTTCAGTCTACTTCAACACAGTGAAATTCGCGTCCAGTGATCGCCACGAATACGCTCGGCTCGTTCCGGAAGCAAATGAATTAGGCAAAAAATCGAATCGAGACTTTGCTCTTTGGAAAGCAAGCAAACCTGGAGAGCCCGAATGGCCGTCACCTTGGGGAAAAGGTCGTCCTGGCTGGCATATCGAATGTTCGGTAATGGCCAGTGATGTTCTAGGTTGTCCTATCGATATTCATACTGGAGGAGTTGATTTGAAATTTCCACATCACGACAATGAACTTGCTCAAGCCGAGGCCCATTACTGTTCGAGCCAATGGATTAACTACTTTCTTCACGCTGGTCATTTAACCATCGAAGGTTGTAAAATGTCGAAGTCTTTAAAGAATTTTGTAACAATTAAGGATGCACTGGCAAAAAACTCCGCACGACAAATTCGTCTCGCTTTTCTTCTGCATGCTTGGAACTCGACTTTGGACTACAGCGAAAATGTTCTTAAAGAAGCTGTTCAATTGGAGAAGTTATTTAATGATTTTTTCCTCAGTATCAAAGACATACTACGTAAACTTGAAGTGGCGTCTCCTTCCGTCCATAATTATCACGAAGCCGAGAAAGAGCTTCAGAATAACTTCCACGATAAGAAGGCTCATATCCATCTTGCTTTATGTGACTCAATCGATACGCCTACAGCTCTTCTTCATATGCAAGCTCTAGTTAAACAAAGCAATATTTACGTTGCCTCTAAAAAGCAAGCTAACCTGTCTCCGAATCACCAAGTTTTGGAGAACATAGCCAAGTATATTACTGACATGCTGCGGATTTTTGGAGCCAATGAAGGTCAACAGTCCATTGGATTCCAGACTTCTAGTTCTTCAAGCTCTCATAATCATGAAGACATTGCTTTGCCGTATGTGCAACTTCTAGCTGACTTCAGAGAGAAAGTCCGCAATATTGCAAGACAAGAAAAAGTTGGTGAAATATTGAAAATGTGCGATGAGTTAAGAGATGATGCTTTACCCGAACTTGGCGTTAAATTAGAAGATCAAGAAGAAAATCAGTCATCCGTCATAAAATTTGTTGATCGGGAAACCTTAATGAAAGAAAAACAACAACATCTTGAGGAGATTGAAAAGAAGAGGCAAGAAAAAGAAGAGGCAAGGAAAAAACAAGAAAACGAGAAGGCTGCCAGATGGGCCAAAGCTCAAGTTCCGCCATCAGAAATGTTTAAAAACGAAACAGACAAATATTCTGCATTCGACGAACAGGGTATTCCTACTCATCATAAAGATGGCGAACCAATTAGTGCTAAACAAATCAAAAAGCTGAAGAAACTTTACCAACAGCAAGAGAAACTCTATAATTCAACGATTCATTTAACCTATGAAGACTATCCGAAGTGGAAGAAGATAAATATTGAGCGTGCCAAATCTTAA

Transcript

Ppa0G121830

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R550	Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis OX=9541 GN=CARS1 PE=2 SV=1
Q5F408	Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=CARS1 PE=2 SV=1
Q9ER72	Cysteine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Cars1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002418 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01406 all species →	tRNA-synt_1e	tRNA synthetases class I (C) catalytic domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032678 all species →	Domain	tRNA synthetases class I, catalytic domain	Interproscan
IPR015803 all species →	Family	Cysteine-tRNA ligase	Interproscan
IPR024909 all species →	Family	Cysteinyl-tRNA synthetase/mycothiol ligase	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10890 all species →	CYSTEINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004817 all species →	Molecular Function	cysteine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006423 all species →	Biological Process	cysteinyl-tRNA aminoacylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01883	CARS, cysS; cysteinyl-tRNA synthetase	EC:6.1.1.16	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.