Gene detail

Detailed information of Ppa0G122440 in Paragorgia papillata

Genomic Location: Contig00153:214337...239539
NR annotation: XP_028401193.1, zinc finger protein 184-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G122440

ATGGTTCGCTCGAAATCAACGAGCGTCGTTTCGGGACGAAAACAGCGAATAGAAGGCATCGTCAAGAACCTTAGTGCTAAAGTACAGACGAAAGAAGGGGTCGTGACAAACGGGGAAGAGCAAACGGACTCACTTATTTCAGCTTCCTTATCGTTACAAGAGAGAATGCAGTCGCAAACGTACTCGGCAACAACGGAAATAGATCACCCAATCGGTTCAGTATATCACCTTCCTCCAGGACTGGAGTTTTCTGGTGTTGTTCCTTCACAGCCTTTGGTTAAGGGAAAACAGTTTGGTCCTTTTACTGGAAAGATAATGACAGAAACAGAGCAGCCAAGCATTGACCATTCTATTATTTGTCAGATTCCTGGCTTGGATGGTGGTCAATATAATTTGCACTTACATACCAGAGAACAAAGATCACACACTTGGCTCAAGTGTATTCAAAGATGTCCTGCAGAGGGTGTTTGTAACATAGTGGCTTTTAACACACCAAAGGGAGTTGTTCTCCAAACTGTAGCTGATGTTGATCCTGGAGTTGAACTGTGTGTTACCTATGATCACTCATATGATATACCAGTAATTGAGGTGTCTCTGATAGACAATGAACCTGAACAGATACAAAGCAAGGATCCTGAACAGATACAAAGCAAGGATCCTGAACAGATACAAAGCAAGGATCCTGAACAGATACAAAGCAAGGATCCATCTGCTGACAAATCTATCGAATCATATCTCGATATGGGGGCACCAGATGAAATGGAAGTTGTGCCTGTTTCTGATGAAGCAGGTCCAATGCTTTACAATGAGAACATTGCCAGTGAGGAACAAGCTGATGGTCTGGGCACTGATCAGACAGACGTTGAATTACAAAAGGACATGACACATACTGTGATGACTGCTGAAGTTGCTGATGATGAGGACTCTACCAAGCAGGATGATAGTAATTCAGAGATTCTAATTTGCATTAAATTCGCATATTACAATAAATGTAATTTGTCCAGATACACAAATGCTGTAAAGTGTAAAACTTTTCAATTATCAGCACTGACACTAAGGCTATCTCGCTCATTTTTGTGCGGCGGCAAGAGGGAACGCTTCATCGCAAGCAAACAAACAAGCAAGCAAGCAAACAAACAAACAGACAGACAAACAGACGTGAAAATCTACACCTCTTGGCGGAATAATTATTTTCAACCGTGTAAGAGTAAGTTTGCAAGCTATGAGGAAAAGCAACGCCATTTGCAGACCGCTCATTCAAGCGAATGCCCAATGTGCAACAAATCGTATTCCAGGGCTTATCTAAAGGAGCACATGATGTTTCATCTGGAATCCTCGCGCGTAACTTGTCCTCTTTGTTCCAAGGTCTTCTCTAGTATCAGCAATCTACGCAAACATGAAAAGAAACATTCCCGACGTGGCTCAGTTGTCGTCATTCGCAAACGTGAGAAGAAGGTTCAGGTTCATCAGTGTTCCGAATGCCAGAAGACGTTTAAGACGGAAAAACAACTGGAGGTCCACCGAAGGAAGCATGTTCGGGTAGTACCAATCTCGTGTGAGGTCTGTGATACCATTTTCACGCATAAGAGACTTCTGCGGCAACACCAAGCTTTGGTTCACCACGGGAAAAAGCCGTACAGCTGCAAGCATTGCCACAAAACATTTACTCAAAGCGGCAACGTAGCTCGCCATTGCAGACAAGTACACGGGGACAAGAAGGACGTACATAGCGAGGATATAAGGGAAAAATACTTGTGTCGTCGCAGGGGCTGCGATCAAAAGTCGTTCTTCAGTCGTGATCTTTTTATCAAACACCTGGAACAACATTCCGGGAGTGGGGGCGTTTTTCCGTGCCGGGATTGCAGTGGCGTATTTTCAACCGCGGGTAATTTGAGCAAGCACAAGAAATCGCAACATAGGAGACAAGCGAAGCCTGCCCCGGTTGAGACGAAGTTTTCTTGTGAATTGTGCAAGGACGTGTTTCCTACTGAATTGCTTTATAAGAGACACGTCAGGGATCATAAGATCAATAAGACAGAAAATAAGTGTAATCTGTGTGGAAAATTATTTGCAAATCGCTCAGGACTTTTCAAACACGTCAGGATCGTGCGATGTTCTGCGACAAAAGCACCAAAGTCTCCGAAATCTGGAAAGACGTATAGTTGTCCTAACTGCGATAAAACATTCGGCCGTTTCTTGGAACTCAGGACTCACCGTCGCTCTCACAATCTCGGCAAACAATTCCCGTGCGACGTTTGTGGCAAGACGTTCACTCAACTAGGCAATCTTGGCAAACACAGAAGACACGTTCATGACGGAGTGCCGCGACCGAAGGAGAAGCCGCGGTCAAAGAACCTGACTTGTGATTCATGCGAGCAGACCTTCTCTTGCACAAGCTCCTTGGAAATACACAAACGACTTCACACGGGACTCAAACCATTCAAGTGCGAACATTGCGAGCGCAAGTTCACCCAGTTGGGAGGATTGAAAAAACACTTGACAAGATGCAAACACCTAAACACTTCACCAACCATGTTAATCCTGTGTTTTAACATTGCTGAAAACGCATCCAACGATCTTCCTCGCGCGAAATTCCTCGCGCGAATTTTCTCGCGCGAATGTCGTGAGACGTGA

Transcript

Ppa0G122440

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H165	BCL11 transcription factor A OS=Homo sapiens OX=9606 GN=BCL11A PE=1 SV=2
Q9QYE3	BCL11 transcription factor A OS=Mus musculus OX=10090 GN=Bcl11a PE=1 SV=2
Q99PV8	B-cell lymphoma/leukemia 11B OS=Mus musculus OX=10090 GN=Bcl11b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379 all species →	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.