Gene detail

Detailed information of Ppa0G128190 in Paragorgia papillata

Genomic Location: Contig00158:1712952...1718880
NR annotation: CAB3996772.1, ornithine aminotransferase, mitochondrial [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZCF5	Ornithine aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=OAT PE=2 SV=1
P29758	Ornithine aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Oat PE=1 SV=1
P04182	Ornithine aminotransferase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Oat PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050103 all species →	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR010164 all species →	Family	Ornithine aminotransferase	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11986 all species →	AMINOTRANSFERASE CLASS III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004587 all species →	Molecular Function	ornithine aminotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010121 all species →	Biological Process	arginine catabolic process to proline via ornithine	Interproscan
GO:0019544 all species →	Biological Process	arginine catabolic process to glutamate	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00819	rocD, OAT; ornithine--oxo-acid transaminase	EC:2.6.1.13	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.