Gene detail

Detailed information of Ppa0G128660 in Paragorgia papillata

Genomic Location: Contig00158:2245216...2262483
NR annotation: XP_028390958.1, mediator of RNA polymerase II transcription subunit 24-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G128660

ATGGCGGATCGTTCGTTCGCTCAACACACTTCAACATTATTAATTTTACAAGCTTGGAGAGAGCGCTGGTCAGCACTGCAATGGACTTCAAAATTGAGACGAATGGTTGCAGAAGATAGTGAAATAATTAAAACTTTACCAGTTGCATTAATTGAGCAGGCGACGTTTGGAAGTACACCAAATACTTTACTTTTGTCCTATATGAAGGATGCTACAATTAATAAGGTTATTCCATTTTCATCAGTGCTTAAAGCAATAGAGCAGTTTGAAGAAGTTCAAGAGCCATCTAGATGTAGGACCCTACTTGCTTTGCTTGATCTTCTGGCAGATATTATCAGTAACATCAGTTGTGATGGAGACAAAACCAAATGTGTTGACTTATCTGTGGCATTATCACATGTCTCATATTGGACATTGAACTGCATTGTTAAACTATTGATTTCTGTGGTTGAGTTTGTGATTTCCTCTGGTGACCACCAAACAATTTCCATATGTTTTGCAAGTGTTAAAAAGTGTAAATCGATTATCACAGAGCTGATTGAAAATACTGTATTAAAGAGTCTTGTTGTGATTGGCAAGAGACAGGATCCATATGCAAGCTTAGCATGGGACCAAGTACTTCAGTCAAGTCTGAAAAACCTTTCAGGGAGGCAGGCACAAGTTATGGTTATTACAGAAGACATAAATGAAGTGCAAGAACATTTGAAAGTCTTGGTGCATGATATTAAAAGACTGCAAAGTTTATCTCCAAGTGGTGAAAGACTCCCTGGAATCGTACCAAGTGTTTCTGTGCATATGTTAACTTATGCACAGACATTCCTTTATCCAGGTGATGAGTTTGACCAAATGTGCAGTTTGTCAGATCTTGTGTACCGAACTCAGTGTTTAACAAGATCTCAGTTTTATACAGAGTTGGTTCGCACATCTCTGGTCAACTTATTACAATCAACCACATCGTTCGACGATGCACTTTGCTTCAGTTATCTCTATCATAAGATTCCATACTTAATAGTTGAAATGGAAAAGAAACATAACTTCGGGGTTGACCCTGTTGTCATAGTTACCATGTTACAGCAGCTGCTTCAGTTTTCACAATTATGGGATTGCATTGATATGAAGTTGAGTATCAACACATATGACTCTATATGTCAACAATACATCAACAGAATGCCTCTACCACAAATCCAGCAATATTCCGAGCCTTTGAGAAACAAAAGAATTATTCCCAATAAAGTTGCCTTGATAATGGCTGCAGGGATGGACAGATTGGACACACAAATTAGATCGCCTCTTAAGATATTTACTGCTGCAGAATCGGAGTTGAACAAATACCTTCAGATTCTTGGAATGGAACAGACCAAGAACAGTGCAATGGTCATCCAAGCATTGTTAAATAGACCAGAGAACCTAATGTGGATAGCTTTAGCTGCTGTTAATGCTGGCAAACTTAAGGCTTTCAGTGGAGCAGTTTTGAGACTCAATGAAACAGCCGAGTCTTGTAGAGACGACGTTGAAGATGACAAACTAGCGGAACACAGGAACGACTTGTTTCATCACTCTTTTCTTATTCTCTGTTACATTGTTGTCAACTTCGGGAAAATGGCTGTGTTAAGTTCTGCTGATGACAGTGGCTGGGGCTTCTTTGTCCAGTGGGTAAGACTATGTATCACAAACAAAATGGATCAACCGATTGCAAATGTTATTACACCACGCGTAGACAAGGCCACAGTTGATGATATCTTGGAGCAGTTTCTTCGTGGAAAGATTCCTAAATTAAGTACTACACATTGGGGGAGATCTTGCTGGAATGTGTGCCAAGCTGTACATGAGCTTCTCACGTGTGCCTCACCGTTACCAGACATCTTCAAAAAAGTGTGCAAAGATTTGGTTCAGACTTGTCCTGCCCTAACTGTCTGTGTCCTTGTCTGGCTAAGTAGCTACATTCGTCGATTACCTTCCGAAGAAAGAGCCAAGTCTTACAGCTTTCTTGATATGTTAATTAATCCTATCATTAACACTCGTCCAAGCAGTTATCCGTTGCTTGAAATTCTTGTGGATAAATTGAAAATTGATTTGAGAAGAAGCCGTCGGATAGAAAATGACAAAGAAAGTTCGACCAAGACTATGAGCAAGTTATTATCAAGCTGTATTCAGAATGGGGCTGTCTCCTTGAACTCCATGAATACTTTTCGTACGTTGCTTAGTTCTGGTGGTCCTGGTTGGTTTGCTGATATTACAGTAAAGGAGTTGCTAAACCAGACAAGAAAAGAAGACGTAAGAAAAGCTGCTGATATTGGTTCGCTGTTAATGCTCTTTGATCCCTCCGAATTATCTCCTGCGCTTCTGTGTTCTGTCAAGTCTTTAGTTCAACATCCTAAAGCAGAACTTTCTCTGGTTGATCCGGTGGGTTGGGGTTTAGCTCGTCTTTTATCACATGCAACAGCGCTTGGCTTGCTTCGAGAAGATCCATCTCACAAAAAATACGATGACGAGGATAACGAAAGACCATTGAAACTGCAGCGGTTTGACGAAGAAGATAAGTTATGGACGCCTAAGTCTATCATTCAACAGGCAATAGTTACTTTATTTGAACAGTTCTGTCACACTTTGAATCGGAACGAGATCGGAGCTCGGGCAGCGTTCGTCATGTCATTCTTGGAGCAAGCAGTCTCGTGCACAGGCCTCTTATCTTCGCCTGTATTGACATGTCTTCAACCACAACTAGTAGCAGAAGTGTTATCATACGTCCCAGGCTCTCTGCCAGCAGACTACCTGCTCGGTCTGTACGACCTGGAGTCAGTTGAAGGCAGAGAATTGTGTTCTAAAGCGATTTGTACAACTTTAGGAACGTAG

Transcript

Ppa0G128660

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16X15	Mediator of RNA polymerase II transcription subunit 24 OS=Aedes aegypti OX=7159 GN=MED24 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004406 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11277 all species →	Med24_N	Mediator complex subunit 24 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021429 all species →	Family	Mediator complex, subunit Med24,	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12898 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27498	FOCAD; focadhesin	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.