Gene detail

Detailed information of Ppa0G129820 in Paragorgia papillata

Genomic Location: Contig00159:476801...480777
NR annotation: KAI0222730.1, Pol polyprotein, partial [Lamellibrachia satsuma]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G129820

ATGGCTATACCAATACAAGTCACTCCAATACCAGCGTTTGACCCGTACGGGGATCAAAATTCCGTGTCGCAGCGATGGGAAAAGTGGATCAAAAGCTTCGAATTGTTTGCCCAAGCCTCTGGATGCAAAGATGACAAACAGAAACGCCATCTGTTGTTACACACAGCGGGAACCGAAGTACAAGACATACTCTTTACTTTAACCGATACTGGAACTGACTACAAAGCCGCGAAAAAGAAGCTCGACGGCTACTTCGCACCGAGAAAGAACACCTCGTACAACAGACACGCATTTCGGCAGGAGAAACAAAAGGAAAGTGAGACAATCAGTCAGTTTACCACCAGACTTCGTCGTTTAGCCGCTCTATGTGATTTTCCTGACGGTAGTGTAGACGGTTTCATTCGAGATCAAGTCACTGACAATTGTCTTTCCAAAAAGCTACGTACAAAACTACTCGCCGAGAGAGAATTAAATCTAGACCGTACTTTGGACATTGCTCAAGCATTGGAGGCTTCCGAAAGGCAATCACGCCAAATTGCCGATGATAAATATGACTCGGACACTGATAGTGATGATGCTTATACAGATGAATATGCCTATGCCCACCGTGATAACGCTAATACAACTCCGATAATGGTAAACGAACTGCCAGTGGATGTAATTATTGACTCTGGTGCTTCACCCCAAGCTGACGCTTTCCAGAAAGTTAAGGACGCTCTCTCCAACGCCACATCGATGCCATATTTCTCGCCGAACAAGGTTACAAAGATTCTAGTAGATGCCAGTCCTGTCGGAGTCGCCGGAATTCTCGTCCAAGATGAAAAGCCAATCGCATATGGTAGTTGTGCATTAACTGATGTTGAAACCCGCTACTCCCAAACCGAACGTGAGGCGCTGGCCATCGTATGGGCCTGCGAGCACTTCGACATCTACGTACGTAGAGCACCTTCCAAAGTAATCACAGATCACAAACCGCTTGTCCACATTTGGGAAAAAGCGAACCCTCCACTCAGAATTGCAAGATGGGCACTAAGATTACAACCCTATGACGCAGTCATCGAGTATTGTCCCGGAAAGGACAATAATCTGGCAGATTACATGTCGAGGCATCCTCGGAAACAAAACATTCTGTCAAGCCGCCAAGAGAAGATAGCAAAAGACTATGTCGATTTCATCTCCGAAACTTCAGCACCTGTGGCCATTACCCTAAAAGAGGTACAGACCGCGACTTCGGAAGATAAAACACTACAGACCGTCATCGAATTCATAATCCGCAGCAAGATATGGTTTCCTGGAATTGATTCGAAAGTGGAAGAAGCCGTCCGGCGATGCATACCCTGTCAAGCGAACACCAGCAGAAAACACGCAGAACCACTCAACATGTCAGACCTCCCACGTGGTCCTTGGCTCAATCTTAGCATTGATTTCTGTGGTCCTCTCCCGTCCGGACAGTACCTTCTTGTCATCATTGATGAATACTCCCGCTTTCCAGTAGTAGAAGTTGTTCGCAGTACAGCAGCTGAAACAGTTATCCCGGTGGTAGACAAGGTTTTCTGTTCATATGGATATCCGGAGATCCTAAAGTCGGATAACGGTTCACCATTCAACAGTCATGCATGGAAACGTTTTCTCAAAGCCTGTTGTGTGAAACACCGGAAGATCACTCCGTTGTGGCCTCAAGCCAATGCTCAAGCCGAAAGCTTCAACAAGCCAATGATGAAGGCAATCAAAGCAGCCAAGATTCAAGGGCAAAACTGGATATTCGCTCTGCATCAGTTCCTACGAGCCTACAGATGTACGCCGCATACAACCACAACATTCACACCACATCGTCTGTTATTCGGACATGAACCGCGGACAAAGATTCCCACATCTGGCTCAGACGAAGTGAAACACAGCGATGACACGACCTCAGAAATACAACAGCCAGCTACAGTTGATCTCCCGGATGATGACATTCCACTTGATGTCGAAGAAAAAGAAGAAGGGAAGAAAACTGGCGCTCCTTTGCAGTCAACGCCTGGCAGACCCAAGCGCATCGTAAGACCTCCGAAGCGTCTAATAGAAGAAATGTAA

Transcript

Ppa0G129820

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21412	ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala