Gene detail

Detailed information of Ppa0G133110 in Paragorgia papillata

Genomic Location: Contig00165:446346...457484
NR annotation: CAB4035997.1, Retrovirus-related Pol poly from transposon, partial [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G133110

ATGATGGAGTTTGTATCTTTTCAGTTTAAACCCTTTTGTCCAGATAGCGACAAGCACGTCAGCAGCCTGCAGGATTTTCTTGGCTACTTGGACGAGACCGATGCCACTGATGCCTTTCCGCCGTCCCTGTACCGAAAGATCGCTTACGATGTGGTCATTGGATTACAATATTTGCACGAGTCAAATGTTTACCATCGGGATATGAAGACATCAAACGTATTGGTGTCTAACACACATTATTGCTACATAGAAGACAGTGATGATCTTGTGGCGGCTTTTAACCTCGAGCCCATTGTCTGTAAGTTGACTGATTTTGGCGAAAGCAGGTCAGAAGAAATTCAGACACAATTACTGGCAAATACGCGAAGCAACAACGTCGACCGAGGCACTCCGTCCTTCATGGCCCCAGAAATCTACACGATGAGAGAAGTTCGTGCGGGAGATTTAAAGCGCATTGACATGTGGGCATACGGTATGATCGTTTATTGTATCTTGAATCCGGATGCGAAGTTTCCTTTTCACCTTGATGCAAAACTAGCTCGCGAGCAATGGTATGGTCCTGCGCGTTTTCATGTCCTGAAATTTGTGGAAGACAAGATTCGTAACAAGCAAAAACCAATGCATTCTTCAAAGTATGCTCAACTGCGTCAGATGGAAGAGTTACAGATACTTAGTGAGGTATACGAAGGATGCACGACCTTTGATCCGCCACAACGCCTATCTGTCACACAGGTCGTGAACTCTTTAGCCGGCGTGGATAAACCTCTCGACGTCGTTCCCTTACCAATCAGTCAGAATTCAGCGCTAGAGAGGTATGACAGGCGTTTTGCAGCCGGTGTGGTATCAGACGACGATCTAGCTTGTGAAAATGCCGTAAATGCTTGTTCCTTCCTATCTGTTGTTCTTGGTGATTTGATTTTATCCTCGGTCGAGAGCTCAGTTAGAAATACCCAAGATTTCAAAGCAAACATCATTTCGCACGCTGAACACTCAATCACGGAATTTCCTAGTTACTTCAACCCGTACAGAAACTCGGAACAGCTGTACGACGCACAAGATGCCTATAATATTTTGCAACGAGCGAACGTGATAACCAACAATTACGAGCTTACCGAAGAAGTTCTGTCCTCTCACTGCGTATATTCTGACAATGGTAGAAAGGATTTTTCAGGTGCAATGAAGAAACTTCAGAGCGAAATGCAAAGTTCCGACCAAGAAGTATCTGTGGCTATTTATACGTGTGGCCAATATGTACTTTTGATTGGTTGTGTGAAGAACAAGTTTTTCCTTGTAGACAGCCACCCGGTTGTCGAGGACGCTCATGGTAACCAGACTGGCGTGGCGTTGTTCTCCGATGGGCACCCGATGAAATGTTCTTTCCTTTACGAATGGCTCACACGTAGATTGAACAAATCTGGGGTAGCTGCAGGAAGCATGCAGTCGTTCGCAATTCTGAAAGAAGGAACAAAACAAGGCATAGAAGGTTCAGACGAAGGCACAAAAGAATTCCTGGAAGACCGATTAGGGAAAAGTAGTAGACAAATAAATACTTTTTTTTTTACAAAATTTTTGCTTGCATATCGTATGTATGAGGGAAAATTAGAAGACAAAGGAAAATTTTTCCTCTTGCAAGATCAACGAGGGAAATACGAGGTTTACATTCAATCAGAGAACAAAAGAATCCGAGGCGATCATGCTTTCAGCAAATATATTTGGTCACTGAAAGAATCAGATGTCCAGTACTCAATCAAATGGAGAATAATCAAACAATGTAAACCCTACTCTAATAAAACTAAACGATGTAATCTATGCTTATATGAAAAATCCGGTCAAGTATCACATCGAGCACGTTACAAGATAAAACGGAACGACAAGACAGGAAAACAAACCACAACGAATAAATCCATCAGTAGAGTCACAGAAAAAGATGAAAAACAGAACGGAACAGATGAAGATGTCGAAACAGACGAACTTGAAGAAAGTACAGAAGAAGACAGCGATGAAGAGGCAGAGTTCTACGGTGGAAATTCAGCTCTTCCCGTGTACTCTAAATCGCGCAAAAGCCTGCGCCACATGGTAATTCAAAGCAGAAGAGTATCCACCAGTACGTGCGCACGTGGGATAGCATGCACAAAGAAAGAAAAAAGAAAGCAAAGCAGAAAGAAACACCCTCGTGAAACTGTGCACCATGTTCTCAACAAAGCTCTTGGTGGAATACAAGCTTGCACTGGTTTGGGACAGGTACCACGGAACAGACAGCAGGCAAAAGATCTAGCCCGCAAATCAAATAGGCAGAATCCTAAAGATGTAGGACATAAAAACATTTCTGGTAGGGGGAAGCTGAACGATCCATGGTACTGTTTGCTTAATGAATCAAAAGTACAGGCAAGAAACAAAAATACAGCCTTTATCCGCGATGTAAGAGTTGGAGCTGAACCGTTTTGCATTCTTGCGAATGAAAGACAGCTACATGATTTGCAACGATTTTGTTGCCACCTACATCGATTCAAGCCGTTAACGGTCGATCCAACGTTTAATATTGGGAAATTTAACGTCACGCCAATTTCCTACCAAAATTTGCTGCTCCACACTAAGCAAGATCAGAAGCATCCCACCTTGGTTGGCCCGGTGCTAGTCCATGAGAAAAAGAGCAAAGAAACGTATTCTTTGTTTTGTGCGACTTTGAAAGCTCTGAAGCCTGAGTTATGCAATTTATTGGCGTACGGTACAGACGATGAAGAGCCCCTCGCCAAAGCCTTCGAAGAGAACTTTGAAAGAGCAACTCACGTCCTGTGCAGCAACCACATGTTAAAAAACGTGGAAAGCCGATTAGTGGAACTGAAAATTACTGGGAAAGCAAAGCAAGATATTTCAGCAGACATTTTTGGCCGACAGAGTGGTGAAGTGTTTGAACGTGGACTTTATGATGCGGATAGTGCTGAGCATTTTCAGAGTCAAATGGCCGTTCTCAGGACGAGGTGGACGAGCAGCCACCAGAATGGGTCCGTGTTTTACGAGTGGTTCAATAAGAATAAAAGCGCAAAATTTGTGGACCACCTAATATCTCCGGTTCGCCAAAGAGCTGGGCTTGGTTGTCCTCCATCGAGGTTCACAACCAACAGGTCTGAGCGTACGAATGGCGTCATACAAGACTACGTGAAACGGAAATGTGGGCAGCAACTAGTCGATGTCTTCACCTTTGCGGTCAAATTAAAAGAGCTGGTGGACATGCAGGAGAAAGAAGTAGAATTAGCAGTGGTGAACAAAGGCGAGTACGTCCTACATCCCGCTTACCGGGAGCTTCATGTTACTATCAGTCAGTGGGCACAGATGACGTACGATCAGCAACAGGCAGCAGTGAAAAAAGTTCACTTGTGCAACGTTGAAGATGTCTCACGGACCGAGGTAACCTCAGTAGCGGAAACTGTGTCTGAAGTCACAAACCCAATCTTGAAGGTAATTCTGGACTCGGGAGTAGACTGGGTACCGAGAGACACCTTGATGTTTCTTGCCGAAAAGGCTGCGAAATTGGAATCCGAACGTACGGTCGTTGAATTGCCAAGCACCGGTACAACGGAAACGGTTGTGGTTCCCTCCAAATCAAATCCTAAAAAACCACACGTTGTCAACATTTATCCGAATGGAAAATGCGAATGTGACAATTGCCATGCCTACGCTTCTTCTTTTATCTGCGCCCACGTTATTGCTGCCAGCTTAAAGAAATCAAAGTTCGCACACTTTCTTCGGTGGTTAGTCACATCTAAGCGCAGGACAGGTGGGGTCAACTACAGCGAAGCTATTTCTTTTGGAATGCCGAAAGGAAGAGGAAGGAAGGGAGAAGAACCACCCCGAAAGCGAAGGCGTAAGCCTACGAATGCTAAAGTCGTGCAAAGGGTACAGATGGTTCCTGCCAACAGACCCCAGCATCAACCTGGCATATTACGTCAAGCAGCACCTCGAATCAACCAAGAACCATCACAACTTACCCAAGCTACACCGCAATTCGCACCACCACAGCAAAATGCTACACCGCAATTCCCACCACCACAGCAAAATGTTTTCCCTCAACAGATGGGCTACCATGATACCGTACCACAAGTACACCAGCAGCTAACTGCACATGCATGTCGACCAACACGCGCGCAAGTCACACCTCCATATCCATCACCAGCACCTAACACTTTCCTTTTGTATTCCCTCCACTTTTGTCCACCACTAACATCCGTGTGTTTTGGTTGCGGCAACCCGCTTAAACAAGCAGGGGTGATAAGTGACCCCCAGGCGAGCTGGTTATAG

Transcript

Ppa0G133110

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PHR2	Serine/threonine-protein kinase ULK3 OS=Homo sapiens OX=9606 GN=ULK3 PE=1 SV=2
Q9FZ36	Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana OX=3702 GN=ANP2 PE=2 SV=1
Q3U3Q1	Serine/threonine-protein kinase ULK3 OS=Mus musculus OX=10090 GN=Ulk3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000069 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44167 all species →	OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051598 all species →	Biological Process	meiotic recombination checkpoint signaling	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G133110.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.