Gene detail

Detailed information of Ppa0G133220 in Paragorgia papillata

Genomic Location: Contig00165:622978...643176
NR annotation: CAB4013839.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G133220

ATGAAGTCGGTGGCCTTGCTACGTCAGCTTCTTTTGAAGGGGCTTGACTTTAGGGGTGTCCATCTTTCCCCAAGACCGGCCTATGAAGTGATCAAGCAGGTGTTCGTTGATCAGGTGCCTTTTCAGGTACCTAATGATGCTTTCCGGGACGCCCTCTCCGGGTATGGTAGAGTGATTACCGTCAAGCATCTTCCCCCTGTCCCCCGTAACATTCGTGTAGCTGGTTTTCCTGCGACTGCCGGCTACAAAGGACAGCCTACGACCTGTCATCGTTGTGGCGTTGTTGGCCACGTCGTACAGCACTGTCCGGGGAAGGCCCAGAAATCCTTTTCGGAGGCGCTTCAAGGGGCCCCTCCGTCTGTTCCTCTATCCATCTCCTCCAGACCGACTGCTGGTGCTGGTAGTAGTGGTGCTGGTCGCCACTCGGAGACGTCCGTTCCTCGTCATGGGAGTGTGCAAAGGCTTTTGTCCGAGCACACTCGGGCCCCTGGTGCATTTGATTCCCCGGCCAAAGTCCGCCGTGTGAATGGTCCCAGTCTCTCCACATCGGAGGACATGGTCTCTCATGATGATCCTTCCTCGTCGCCCATTGAGTCGGATGTTGCTCCCCTCATTGTTCTTGGGGGGGACACATCTTTGCCTCCTGCGCCGCTACTGTCGGACCCTAGTTTTATGGGTGCCAAAGTAGTCGTGCGCAAACGGCGTTTAGTTGCCGTTAAGCGGGTCTCCCGCAAGATGTGCATTCGCCACGCTTTTTTGGCTAAACCCTCTGTGAGGGCAAGGCGGGCGGGTCCGAGTGTTAAGCGCGAGTCCAAGCCTGGCAGAGCGACATCTTCTTGGCCTGATCGCAGTGTTCTGCACGGCAAGAATGATCGCCTACGAATTATGTGCGCGGCTTTGGACTCCTCGGTGCTTCCTGCTCCTTGTAGCTCCTCTGGGCTAGTGGCAACCGATGGCCATCACACTCGTCGTCTGGTGTCTTGGGCGCAAAACCAACTATCCATTGTGGTTGCGTCTGAGCCTCCAGCTGGTGAAGTGGTTGACCTTCCTCCAGTCGACTCCGCTCTTGTCCCGTCGTTCGATGCAATGATCGCCGTTCAGGATAGTCCCGCTTCCATCTTAGAGCCAGTTGATGACCTCGTTGGGGACACTGTCGTCGACCCTATTGCTAACTTGGGCCGTACACTTAGTGACCCTCCATCATCCCTGAGTGTCGGTTCTGGTCCTTGGACTGGGTCCATTTCGTTTTCGGATGATGATCGCTCGTTGGTCGGCCTTCCGTCTTCTCCTTGCGCTGGTTCGGTTCTATCCGTTGTGATAGATCCGCCTTGTACTCCTTGTACCCTCTTATGTCCTCCTGGACAAATTTTGCCTGATTCCGATGACTCTGGTTCGGCGATGTTCTCGCCTTCGTCGGAACTAGGGTGTCCATCGGAATCTATTGACCAGTTCCTTTCCTCCGCCTCGGGTCGCGGAACTGACTGTATTAAGGCTTTTTGCTCTTCCGCTGTCAGTGCGGAAATTGTCATCCAGGACTCCGTGGATATTCTGGAATTTTCTGAGTCTGCTAGCGCAGACTTTAAAGTGTGGCGAGATGAGGCAGGTCGCTTTGTTCAAATTGAAGTGTCCGTGGGTGAGCAGTGCTTGGGTTTTGTTTCACTCTACGCTCCTAATCGCAATCCGGAGCGAAACCGTTTTTTCGTTTCTCTTCCGGATTTTATGGATTTATCTGTGCTCACTTTTTTGTGCGGTGATTTTAATGCCGTGCTTGACCCTGTCCTCGATCGGCGTCATCCGCCGTCGTATCAGCGTCAAGCTCCTAATCCGTCTGCTGAGAGTACTTATCCTGTGTGGCGCACGCGACATCCTGGTGTTCGCACTTATTCCTGGGATCATGGTTCGGGAAATTTCTCTTCCCGTATTGACATGATCTGGGCACCCGTTGGGATGCAAGGGCAGATCACGGAGTGCGAGTATTATCCTTCCTTTTTTACTGATCACCGTTATCTGTTGGTGTCCTTTACTCTGGACTCGTTTGAGGCCAGGGGACCCGGGTTTTGGAAATTCAATACTTCGCTCCTGGAGGATCCAGACTACTGTCGGCTGTCTGATGCCGGTGATTCTTCTGTTTTTGGAGAACTCTGTGCAATCCAGGAGGAGTTGCGGGAGCATGAACTTCGAGAATCCCAGGCTGCTCAGGTTCGCTCTCGGTGTCGTTGGGCAGAAGAAGGAGAAGTGTCTTCAGCCTTCTTCTTTTCTTTAGAGCACAAGCATCGCTCTAAGCAAACAATGGGTGGTGTCAAAGACCCTCACACTGGCGTCATCCACCACGATCCTTTTGAAGTTTTGGAGGCTTGTGACAGCGACGTTCAGGATCGTCTTCTTTCTAAATTAGTTCGCACTCTCTCTCCTATTGAGCGGGATGTGTGTGAAGGTTGTCTGTCCATGGACGAATGTCATGCCGCGCTTAAGGGGATGTCTGCTGGTAAGACTCCTGGCTCGGATGGCTTTCCCATGGAATTTTACCAAAGTTTCCCGAGCGCTTATGAGGGTGGGCAGTTATCTACTTCCCTGCGTCGGGGGCTGATTATCGTCCTTTTTAAGAAAGGCGAGCGCCTGGAGACGAATAACTGGCGCCCTATTAGCCTGCTCAACGTCGATTACAAGATCGCTACACGCGCTATTGCCGGTCGCCTTCTCCATGTCACCGGTTCGGTGGTCTCTCCTGATCAGACATGTGGGGTTCCTGGTCGCACCAATGGCGAAAATCTCAGCGTTGTTCGCGACCTGATCGATTTTGCCGAGATGGAGGATCTCCCACTCGCCTTGCTCTCTCTGGATCAAGAGAAGGCCTTCGATCGTGTAGACTGGGGCTTTCTATCGCGTACTCTCGAGACCATGGGTTTCGGCCCAGGTTTCTGTCGATGGATTGACCTTTTCTACACCAATACCGAATCAGCTGTAGTCATCAATGGGTGGACTTCTTCCTTTTTTTCTCTTTCGCGCGGAGTGCGTCAGGGCTGTCCTCTGTCGCCCTTATTGTATGTTTTGTGCGCGGAAGTGTTAGCCTGTAATTTGAGGTCGGCCCCCGGCATCTCTGGCGTTCAATTGCCTGGTTCTCTTGAGGAACTGAGATGCTCTGGGTACGCTGATGATACCTCAGTTTTTGTTACTTCGGATGCCGCCATTGGCGATGTTTTTTCCACCTATGATTTGTACGAGCATGGTTCGGGGGCAAAGCTGAACCGTGGGAAATCCAAAGGTCTGTGGCTTGGGGCATGGAAGAATTGCTCTGACCGACCTTTTGGTCTCAATTGGGTCAAGAAACTCCCTTTGTTAGGGGCTGTTTTCAGCCCTTCTGACTACGCCAAGGAGACCTGGGAGCCGAGGGTGGAAAAGGTGGAGAAACGTTTGGCCGCATGGAAGGGTCGCTCTTTATCCTTTCAGGGCAAAGCCACCGTTATCAATGCCTTAGCCCTCTCACAGAATTGGCACTTGTGTGTGGTGTTTGTGATGCCATCTTGGGTTGCCTTACGTTTGAATCGCGCGATCTGGCCTTTCTTTTGGTCGGGCAAATGGGACCTCGTTGCCCGTAAAACGATGCACCAATCCAAATTCGCTGGTGGCTTCGGGATCGTCGACTTCCGTCTCAAGGCTTCTGCCTTGGCCCTTCAGTGGCTTCGGCGGTTCCGTAATGATTCGTGTGCCAAATGGAAAGGTTTCTTCCACTTTATGTTGCACCGTGTGTTCAATGCTGATCCTTCCTCCTTATTTGCTATGCCGGCGTGGTCTTTGGCTCAACGTCGGCGTCTGACACCTTTTTATCAGCATCTTTTGACCGCTTGGAGACATTTTGATGGCGGGTCGTCGGCTGGTCAACTGGTCTTGGGGGTCCGTCGCGACGCTCCTTTTTTTCCGACTTATGGTCCCCTCCATTGGGATGAAACCTGGCACCAGCTGCACATCGTCTCCCTTGATCGGACAATTACCGACCTCAATTGGAAGATCGCGCACGGTGTTTTATACACCGCGTCGCGTCTTGTCCACAGCTTCCACTATCGGGACATTGATGTCATGTGTCACTGTCGTGCGGATGAAGAATCTTTGGAGCACCTGTTTTTCCACTGTTTGTTTGCGCAGCCCCTGATTTCTTGGGTCTTTGACCATCTTAAGTCTGCTGTTCCGAGTGCCCGTCCGTTTACCGTTCAAGAGGTCTTGTTCGGGTTTTCGACGCCGCGTCGCAGACGTATACCCAAGATCTTTTTGTGGATGCTGCATGTCATCAAACATCGGCTCTGGCTTGCCCGTTGCGATTTTCGTTTTCGTGGTAAGCCGCCCGACGTAGACCGGTGTATGCAAGGTGCCACCGCTCGCATTAAATTTGTCCTTGCCCTTTAA

Transcript

Ppa0G133220

Protein

Uniprot

Uniprot term	Description
P14381	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan