Gene detail

Detailed information of Ppa0G137220 in Paragorgia papillata

Genomic Location: Contig00175:649008...729563
NR annotation: XP_028411258.1, RNA polymerase II elongation factor ELL-like isoform X2 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10390 all species →	ELL	RNA polymerase II elongation factor ELL	Family	Interproscan
PF07303 all species →	Occludin_ELL	Occludin homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010844 all species →	Domain	Occludin homology domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR019464 all species →	Domain	RNA polymerase II elongation factor ELL, N-terminal	Interproscan
IPR031176 all species →	Family	ELL/occludin family	Interproscan
IPR042065 all species →	Homologous_superfamily	E3 ubiquitin-protein ligase ELL-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23288 all species →	OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0000987 all species →	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0032968 all species →	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G137220.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.