Gene detail

Detailed information of Ppa0G137840 in Paragorgia papillata

Genomic Location: Contig00175:1605874...1636437
NR annotation: XP_028406870.1, zinc finger FYVE domain-containing protein 16-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G137840

ATGGCTGAAAGCTTGGAAAGTGACCAAGCGAAACTTGCACTGCAAGAGAAACTGAATGAATTTGATTCTGAAACTCTGCAGCAAATACTACAGACAGCAATTGCAAATAAATCGAAGGAATCAGATGAACAAGCTGAACTTGGCAATCCCACTAAAAACATCACACATGCTGGGAATCAGTCTAACATGGAGAATGACAATCTAGAAGACAATGAGTTACTTGAAAATGAGAAGGAAGAAGTTCTGGTAGCTTCCTTTGCTTCTGATGCTGTTCATAAAGCTGAGGAGGAATTATCTCCAAAGAATGAAAGCCAATCACCTGTGTCCCACTCACCAACTACCTTAACTGGCAATATGGAAGCACTGAAGATACACCAAACTACTCACAATGAACAGCAATGTGATTTCTCAGGTCCTGTCCTCATCCCATACAATCAACCATTCATAAGTGTCGAGTCTGCAGTTCCACCTATTGTCTTACCATTGTCGAAGATTGGACCATATTTGCCTAAAGATGTTGCCATTACAGATACAGACACTCCAATACCATTGCCTTTTAAACCAATGCTGATGATTAAAGGCCAGACAGCTGCAATTATATTTGAGCTTGTGTCAAATGTTTCCAAACAGACTGCATCAGTTTATCGCGAGCAAGGTCTACAGCATTCATTGGGTGATCAACAGCAACCACAGCAGGAAGAAAAACAACAACAACTTCAACAGCAACTTCAACAACAACAACAACAACAGCACCAACAGCAACAACAGCAACAACAACCACAACCATTTGGCTTTTCACAACCCCAATATCAACAACAACAACAACAACAACAGTTGCAGCAAGAACAAGTTTCCTATTCTCAACAACAACAACCACTACCACCACAGCAACATCAACAACAACAACCATACGGCTCTGCACAACACGCGTATCAACTAGGCCCTTCATCAGTGTTATCTCGACCATCTGTGGCTTCAAACGTTGAAGGATCAGGAAGGTTCTTGCCAGAAAATACACCTGGTCTTCAAGCTCCTCGGTGGAGGAAAGATGAAGATTATAAGAATTGTTTCCACTGTGAAAAAACCTTCTCAGTAACAAGAAGAAAACATCATTGTCGAGGCTGTGGAATGATCTTCTGCAGCGAGTGCTGCAATCAGTTGGCTCAGTTACCTTATCTGGGATTCAAAATAGAACGCATTTGTGTTCTTTGCACCCGGACTATCAAAAAAGCTCGTGCAGAAAAGGCAAAACGAAGACAACAACAACAACAACAGCAAGGAATGCGACGTTATTCCCAGTCTTCTACAATACTTCCTTCAACTTATGTGGGCAGCGAAAGTCTTCTTTATATTCCCAATGACCAAGTAAACAGCCTGGGTATGGAAAACTCTGTACTGCCTGAAACGCAAAGACAACCATCAAATTTCATGGCACCAGAGAGCGTAACTAACGACAACTCCGTTACCCCGGTTACAAATTTCATGCCCAATGCCCACCTCGATCAAAGTGCCCCCAAGCGCACAGCCGTCCGTGGGAATTCGTCGTTTGGGTCTAACGACAGTCCTGGGGCGACTCTGACGTCGTACACCGCTGACTTCGTGCAACGTTCATTCAAGGAACCGTTACGTCCCGCGGGGCGGACTATCACGTGGACAGATCATGAAACGAAAAGCAGCATCGAGGAACAAAAGAGGCGTTTTAAAAATATTGTCAAGGAGTTGAAAAATCCGGATGGAGTTGTTATTCAGACAGCCGTTGAACTTTCTGTGAGGGTAAAAAAGGTTCAAGTTGTAATTAAGCAAGGTATACACGAAGCGTGGTTTCTACGTAGCAGTGGTTTCACCAGCTGTGGGCAAAAAGAAGTCGCCTTTCTTCTTGAAAAACGTATCAATGAAGAAGTATTTCCTTACGAGTTGCTTAAAATCTACCGAACTTTCTACTCATTAACTTTAAACCAAGGTGAACGCTTTGAGCATGGCAATTATTTAGCTTTTAACAGCTCGTTGCTTGGGAGTGAAGACAACAAAGGATTTTTGTTTGTGTTGTCGAACATGGCTCCCAAGATAGTTCAGAACCTTGCTCCTAACGAAACCTTTCTGTATGCTGTGTTGGTCAAACAGTCTGAGTTAGCGTGTGCAAAGTATCTTCCCGCCAGATTGCTTATTGCTTTAGGTGTTCAACAACAGTGTTATCCTAGTCCCGCTCTGAGTTGCCGAGATAGGCCAGGTGTATGTCATGTTGAGCCCAATGAGCTGTTTTATTCAACCTTCGTCGCTGTCAATAAGTTTCTGAATCACAAAACTCCCCAAGCTCTTATCCCTGGTGTCCATATCTTGAAATCCGGAAGCAAGGTTGCCTTGGAATTACCCTTCGCTTACCAAACTGAGATTATCAGCATTTTCGATAGCTTATTGGTAGACGACGACAAACCGGTTACGATTCCTATAGCTGGAGACCTGGTCCCTGATGCCAGCGGTCATTTTGTTTACTCTCCTAGCAACGTGCCATCAGCGCATCGAGGTTTTGTGGTTCTTCAAAACAACAACAATCAAGAGGAGCCTGGAAACCAGTATCTGGCGTTCAGTTCCATCCTCCTCGTTTTATCATTCGGTGAGGCATGCAGTTCTCGCACCACATTTGGTGTTGAAGTTATTGAAGATGGCATCAAGGTCACTCTTGCCGGCAGCCAAGCGAAAGAGATCCGCCAGGGCGTCTATCAAGGAACCAATTGCTCTATGTTCGTTGGTAGTGCGGATTCACAAGACCAGTTTATCTTACGCTGGACCAGTGAGTCGGGTGGAAGTGTGATAAGTCGTCCAAAGTTTGTCGTAAACTCACGAGATAGCAGAAAATCTACCAAAGGGTACACGCCCATTTCCAGCTCTCTGCCACCACCTCGCCCTACAGGAGGACAGACGAATGTCATTATCGACCGAGTTAAGACTCGGGATATTGAGGCAGCAATTCAACAGAAGCTTATTGGTGATCCACAGCAGGCTGTGACAAAACTGGAGAGCGATGTGAGACAAGCTTGTGCTGGTTGCTTGCTTACGTTTGCCACTCGACTTCGTCCGAATGCTAAGAAAATATTAATTTTAACCTTGAGTCTTGGTGCAGGGTACAAGAAATGGAGTCTTGGTCCCAATAACCAACCAATCAATCTGGCTCGCTCCTTACAACTTGCTCTCAATGAAATTGATGTTCCTGAAACCAACAGCGAAATAGTATTTGTATTTAATGTGACCCTTCAGAAAACAAACTAA

Transcript

Ppa0G137840

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95405	Zinc finger FYVE domain-containing protein 9 OS=Homo sapiens OX=9606 GN=ZFYVE9 PE=1 SV=2
Q7Z3T8	Zinc finger FYVE domain-containing protein 16 OS=Homo sapiens OX=9606 GN=ZFYVE16 PE=1 SV=3
Q80U44	Zinc finger FYVE domain-containing protein 16 OS=Mus musculus OX=10090 GN=Zfyve16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008738 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF11979 all species →	SARA_C	Smad anchor for receptor activation-like, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR022557 all species →	Domain	Smad anchor for receptor activation-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46319 all species →	ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0031901 all species →	Cellular Component	early endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G137840.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.