Gene detail

Detailed information of Ppa0G139550 in Paragorgia papillata

Genomic Location: Contig00176:2408008...2421795
NR annotation: CAB3996343.1, zinc transporter 5 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G139550

ATGGAGCGAGAGAGATTCAGTGGAAATGTTTTATTAACTCAGAAAAAAGATTTTGGACGGATTGAACCTGGGTTAAGTTCAGCTCCATATCTTGTGTTTTTGGTTGTTTCAAAAATACTTTATGTTTATGGATTTTTCCTGTCGCATGATCTCTTGAAAACTGTGCATATTGTTCAATACTTATTTCTAGTTAGAGCGAGTTCATCAATAGTATTTGTTATTCTTCAAAAACCATTGTCATCAGGGAAAAGATTGACCACACACCAGTGGTACCAAGTAGCGAGACATGCTTTTTTCTCAACCATTTTATCATTATTACTTTTGGATGGATTAACATTGTGTGGCCCAGTGAGAACAATTTTGCTATCAGAACATAGTGATGTAGTTTTTCTTGGAGTATTGGCAGTTCTTTTCAAAACTGGCCATCCTGGAGCAACCAAAACTCGTGGAGCGCTGCTATTCTTGTTTGCAATGATATCTCTGCTTCTTTTTGACAACGATGAAGTCACACGAAGCAATCATCATCCTGAAGGAGCCCACCGTAGCCATCTTATTCATTATCTTTACCAATGGAAAGCTCTTTCTTTGCCAGGATTTCCACAGCTCTCGGACCACAAGGGTGGTTTGTTGTTACTGAGTGTAGTTCTTCTCTTCAACGTTGGAAATAAAAGTTACGGCAGGAAAGTCGCGGTTGAAATTGGAGGATCTAAAAGGTTCAATGCTTTGACAAATTCTGTATCAGTGTTGTTTCTCCTTCCAGTTGCAGTTATGCTTTTTGTGTTCAGGGAAACTGATGTCGCCTGGACAGATAAACTTCTTTCATTTTTATTAATTTCTTTTTCCATTGCCTTCGACTACTACGTGGAGGCCATTTGTACAACGAAACTCGACTCTCACAAGACATATAAATGGGGTTCGACTGTTTCGTTTCTGTCTGCTTTCGGTTTTGGTTTGTTGTGGAACGACCATCATATTGGATCTCTTATATTTCCTTTCAATAAGGATGCTTATGATGAACATGGCATATCTGGGAGTGTTGTTATCGCTGTCGTTTTCCTTTCTATAGCTACCCATCTTCTATCTCGTCCTTCTCCTGTACAACAAGGTGTTAATAAAGGAATTTTGATTGGCTACACAACCAGTGGAACGCCATTATATAGTTTCACCTCACCACAATCTGTCATAGCAACAGCCAAAGTCTTTCTCAGGCAGGTCCTGGCAGAAACGGAATCGAGACAGATATTTTATTTCCTTTGTCTTAATTTGACGTTTACATTTGTTGAGCTGTTTTATGGAGCCTGGAACAACAGTCTGGGGTTAATATCTGATGGTTTTCACATGTTGTTTGATTGCTCTGCTCTTGTCCTTGGTCTCTGTGCGTCTTTGATGAGCAGATGGAAGCCGACCAAGCTATTTTCATACGGATATGGTCGTGTGGAGTATCTGTCTGGCTTTGTCAACGGATTGTTTCTCACGGTTATTTCAATTTTTGTATTTTTGGAAGCTTTGGAAAGACTTATGGACCCACCAGAAGTTAACACGAACAGATTGCTGGTAGTCTCAGTGTGTGGTCTGGTGGTCAACCTAGCTGGCATCTTTGCATTTCGTCACGCTCATTCACATGGTCACTCGCATGGTCATTCTCACAGTACTGGTAATGCACATGACCACCATGATAAAGATCATGGTCATGGTCAAGATCATGGTCATAATCACGGACACAGTCATGGCAGTCATGGAAGCTGCTCGGACGAAGGTCATTCGTCTCACAAAACAAGCGCCAATATGCAAGGAGTATTTCTTCACGTGATGGCTGATACCTTGGGCAGTGTTGGAGTGATAATATCCAGTCTGTTGATTCAACAGTTTGGATTCCAAAGAGCCGATCCCATTTGCTCACTGTTTATAGCAGTGTTAATATTTGCTAGTGTAGTACCATTGTTGAAGGAGTCTTCATTAGTACTGTCTTTGAGAACCCCACAAGAACAGCTAGGAGAAGCGTTAAAAAAGGTTCTCTCCATTGATGGTGTCGTAAATTTTCGAAATCAACATTTCTGGACACATTCAGACAACCTAAAAGCTGGAAGTATTCATGTTCAGATTGTTCCAACAGCAATAGAAGCAAAAATCCTTATGCAGGTAACAAGTATCTTTAAAGAAATTGGTGTAAGTAATTTAACAGTGCAAGTGGAAAAAGACATTTTCTTTGAACATATGTCAGTGTTATCTGCTGGGTATAAGTCTGTCCTTCAACTCACTCAGAGACTTGACCTAACTCCTTTACAATCAGCTTCCCATATAGAAAAAGACTTTATAAAGACAATTTAA

Transcript

Ppa0G139550

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28CE7	Proton-coupled zinc antiporter SLC30A5 OS=Xenopus tropicalis OX=8364 GN=slc30a5 PE=2 SV=1
Q5ZLF4	Proton-coupled zinc antiporter SLC30A5 OS=Gallus gallus OX=9031 GN=SLC30A5 PE=2 SV=1
Q8TAD4	Proton-coupled zinc antiporter SLC30A5 OS=Homo sapiens OX=9606 GN=SLC30A5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01545 all species →	Cation_efflux	Cation efflux family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027469 all species →	Homologous_superfamily	Cation efflux transmembrane domain superfamily	Interproscan
IPR045316 all species →	Family	Zinc transporter Msc2-like	Interproscan
IPR002524 all species →	Family	Cation efflux protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45755 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006829 all species →	Biological Process	zinc ion transport	Interproscan
GO:0006882 all species →	Biological Process	intracellular zinc ion homeostasis	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:1904257 all species →	Biological Process	zinc ion import into Golgi lumen	Interproscan
GO:0006812 all species →	Biological Process	monoatomic cation transport	Interproscan
GO:0008324 all species →	Molecular Function	monoatomic cation transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14692	SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.