Gene detail

Detailed information of Ppa0G142560 in Paragorgia papillata

Genomic Location: Contig00181:2091554...2098294
NR annotation: CAB4005949.1, Kinetochore-associated 1 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G142560

ATGTCTTGGAAAGTAATCGAAGTCGATGTGCAAGAAGAAGAGGCGACTGTGAATTTTACCAGTATCGAACAGAGTGCTGCGTTGTATAAAGTAGATGTGCTTGCTCAAATCACATCGGACGAAGATGTGTGTGCTGTCTCGATTAAGACGTCAACTGCAGTGTCCGCTGGGGCGTTCAGCATATCTGTGTCGAACGAGATTTATATTTTCGAGGGCGAGCATTCCAATTTCTTGGCTACGTTGTCGCTGGAAAGCTGTGTTGACACAATGGCTTGGAGTCCTGACTCTCAGTTTCTGATCATTGGGGATAGCTCTGGAACCATTCATTTCTTTTCTCTTGCCCGTAGAGATGTTGTCTTTTCTACTAAGTTGGTGGATATTGATGTAGACAGCAGCAATTCAAGCCCAGTTTTTTGTAATTGTATGTTTACCACCAATGAAGAGAGTGATAATGTTAATCTGACGATTTTGTCTGCAGGTGGCTGTCTGTTTTCCTTCAAAGATCTTCCTTTAGCAGATATGTCAGCTGCCCTCGAGTCAAAAGATTTTGTTTTCATTAGTAAACTGAAAGAAAGCATCCAAATGGCAATAGTGGAGGTTACAAACGTCCATGATAAAGCCAGTTACTGTACTGCTACCACCATTTTTGGACAATCCTCGATTATTGTAGCTGGAAGTGGCAATGAGGTGGTGAGTATATGGTGTGACCAAAATGTCATGGATGTTATTGATTGTGAGCTGCTGGATGGAGCTGCTGTGAGAAAATGTCAGATGAGCCCAGATGGTAAATATCTTGTAGTTTTAGATGAGCATTCAAACCTTAGCATATGGGATGCCCACACATTGGTAATGCTATCACTTCCATATCATTCAGTGAAGGATTTTGTTCTTACCAGCAGTGCTGCTACTAATGATAGTCATACTGATGTGGTTGGATCTGATGGGGGGCAAGTGGTATTGTTAAGTGACCATGGAGATGGTAAAACCCAGCTCGAGATTTATGAGTTGCCTCGCTTTAAAAAGATCCACTCTATAGAGGTGTCCCAGAGTTGTTCCCTTGCTGAGTCCAATTGTTATCAAGAAAGAGTGTTTTACACTGAAGAGAATACTAGCAAGAATAACAACAATGTGATTGAATTGGTACACAAATGCCTTTCTGAAGCTTCTCCTGAGCATCGTGTTTATAACCTAGTCCGAAAAAAGAAGTTTGATAGTGCTCTGGAATTTTCAAAAGCATTTGGACTAGATGTGGAATTTGTTTATAAAGCCAAGTCCAGTACAATTCTATCTGATATATCCAGAAATATCTCAGAAAGTGATAGAAATTTGGATGAGAAAGCTGTATCAGTGGACCAACTCATTGAAGAGCTTCAAGATAGCCTTGAGAATGTGAAAAGTATTGAATTCTGTGTTGATTGTTGTTTGAAAGCTTCCCCTCCAAGACTGGAACAGGTTTACAGATTGCTCTGCTTTGCCAAAGAGAAAGTTGGAAAAGTTTCTGGTAAAGAAAAGCACAAACACAGCAAGGAAATGATGGAGGTCCTTCATGCAATTCACCGCCTCGAGACCTTCCAGATGGTTTTTGGAGATGATTGTTTTAGTGCACGTACATGGCAGCATTTTTGCTCTGGTGATCTGTTGACCCAAGTAATGCAGTTTCTTAGTCAAGGGAACATGTCTAGTGCTGCTATCATCTGGAGACGTCATCAAAGTGAGTTTGAAGACAACCTTGTAGCAGAAAGCCTGAAAAGTGTTTTAGCATCCATTAGATCTGATTTACCTTCCTCAACCATCATCTCGTGGCTAAAGTCCTATCTCGTCCCATTTGTGATATGCTCAGCAAAGAATACAGATGCCTTGTATGTTCTGGCTTCATGGTTAGAGAAAAGAGTTGCCTCTTTGGAGCTTTCTGAAAAAGAAGATTGGCCTGGCAATGGACTTGGAATGGCAACTCTACTGTTTGATGTGCTCTCTGAATGTGCTGAAGAAAGCAGCAACTATATGAATTTTCCAACCGTCCAGATCACCAACCAAGTTTATGGATCTGCCCTTGTTGATGTATCTAAAAGGAACAGCAAGCCAAATCCTGTCTCCAGTTTATCACTATTGGTGGAGCATTTAACAGAGCTAAAGAAACTTCACTTGAATTATCAATGCAAGATTCCTTTGGCGGAGTTCACAAAGGAAACCCCACTTGGCATTATGTTTAAAATGCTGGACAGTGTTTTAGCCATAGAGTTGATCCCAAGTGTTATCATCAGTCAAATCATGCCATATGGAATTCAACATGGTTTCCAAATTGATGATGTTCTTCTGAAGTACATAAGTAACCAAGTGAAGCAAGTATCTGTTGCCAGTCTGTCCAACACGTTATGTGAAGCACGTCTCGTGGAGGTTGCAAAGTGCATTAAGACAAGAGATATGCATTTTGAAGCCATTCTAGCTCTAATGTCGTGGGCATCAGTGCCTTGGAGTGGTGTTGTGGAAGAAATGGTGAGTAAAGCAATGGCTGATGACCCTTCTAATCAAAGTTTGAAACAGAGCTACCGTTTGATGGAGTTGAAGAAGATTCTCAGTCAGTATGGTCTTCGTGGTATCGAGTTTTCTAATGACTCACATGTCAAAGGTGTGGTTAAGTACATTCTTGGCACATCAAATGTAGCAGCTTTGGAAGATGCATTAGAGATCGTCACAACTTACCACTGTTTCTCCGAAGAAGAAGTTTATTTCATCAGGCTCCAGAATTTGTGCTTAAAAGGCCTGCCTTCACAAATTATCAAGTTGCTGAAGATTATCTCTAATTCTCAAGTTGTTCAGAGGTTTCTTGTCTGGGTTTCAACCATCATAGAAGACAACCCTGTGGATGAAACTAATTCCCAAGAACACACTGCCATCACTGAAGTAGCAATACACATTTTGGAATATCTTCAGAATGTTGGTGAGAGCAGTTATGAGATGAAAAGTACATTGGTAACCTTGAAGAACATTCTTGCCTTGCAGAAAGAGTTTTCAATGTTTGTACCAATTAGCAGCTATGAGGATGTTGCCACCAGAGAAGAAATCCTGTTGACGTATGTCAGAGAGCACAACGCATCCATTATGATGTTCATCAACAAGGATGAAGAGAGAAATTACCATCATGAAGATAAAATTTCAAGGCTGGGAAACTTGTTTGGCCTGTCTCATGCTCAGCTTTATTCAAGGTTTCTACTCCACAAAGTTACAAATGGTTCTGAAATATTCACTTTTAGTACCGTGGCAGCTTGCAATAAGTGGTTAAGTGAGATCATGTGTGAATTGTCATCAGAAGAAGTGTTCAATCTATGCATCGCCCTCCTGCAGAAATATATTGTCCAGGATGCTGAAGTGATCACGTCAACTGAGACCAATGTTACTGTAATGTTATACTGTTTAGCCTGCTGTGCAGCGACACATAGTAAAGCCAGTAATCTGGTTGACTACATGGAATTATGCAAATTGTGCTGGCTGAGCACTTTGCTCTATGTTCATTGTGAAAGTGGTGATCTCTGTATGTCAAGATCTATCTGCGAAGAAGATCCATTGTTGTTATGGAAAGATGCTGATTGGTTCAGAGATAATGGTTTTGTGCTAGATGCAAATGTGGCACTTCCTCTCCACCAGAAGGTTTTGGAGGTCCTCATGTTGGTGCATCAACATCCTGCTGAACATCTGGAGAAAATGACGATTGCATGTAGAGATTTGGTTCTCTATTTACAAGAGAACAACCTTCACGAGGTAGCGCTCCACTATGCACTCCACTCAATATACCATCTTCTCCAGTACTCTGCAGGGGTCAACGAACTGATGAATGCAGCAGAGAAGAAAAGCGATGTCACTCTTGATGATTTACAAAAGGATCCTAAATTCTTGGTGCTGAATGAGATGGGTGTGCATGGTGTCAACCACATTTCCAACATGTTGTTGAATCTCATGTCAAAGGTGTTATGCAACAAAGATATTGATCAGAATCTAGCCCTTGGATATCTTTGCTGCATTCCAGAAGATGCAGCACTGCAGAAATTAAGGTGTGACTTTGCAGTCGGACAAGGTCATAATGCCTCACAAGCGGTCACTGTTTTCACAATTGCCCTCTACTACGCTGCCAACTTCTGCGACCACAGCATGGTGAAATCTGTCAAAGAGCTGTACTCTGCTGCATTATGGTATTCCAAGGTTCAGAAGCTCAACATCGCTCGTGATTGTCAATTTACTGGGGAAAAGAAAGAGGTGAAGAAAGTTCTTGAACTTTTGTTGGAGAAGCCCGGAGTTGATGTGAAGCTGATAATAGAGTTTTGCCAGTCGTTTGGTTTTGAATTAGATGCAACCCTGCATTCCTACATTCAAGTCAATTTGGTTGGAGGTGGTACCAATTATCTTTCTAAAGCACCCAATGTAGATTCTCCTGAAACTACAACAAGCATAAAGGACTTTGAGAACAATTTTCTTTATGCTGTTAGCTGCATTTCGAATGTGGCCAAGCTGTTGGTCCTCCTGCAAGATGTCCTGATGTCTCTTTCCATGTATGATTACGAGAGAATAGCAATTGTCCTTAATGAAATCATCAAGCTTTCTAAGGACGAGGATGAAGCAAGGTTTGGAAAGCAATTGGAAGTGCTGAAAATATTGGCTGAATATAAACGCACTGCATCTCCTCCTAAATACGAACAGGCATATCAAGCTAAAGAGTCGAGTGCCGTGGTTAAGGAACAGGTGGTGGTTCAACAGAAATCCAGCCAAGAAAGACTACCATTTCATCCATTAGTCTATGGAAATCCGTGGAAAATTATTGGTCCTGAACTCAATGATGAAACCACACCAAAGCTTCTTCATCTTTGCAGGATTCTGAAGTTGCAACAAGATCAAGTCTATGTCACTGCTGTTAATAATTTGTTGTCATCGTGTCTTTTCGACCAGCACAAGGAGCCTACAGTTTCTACCCCGATTGAGTCACCTAGCTTCAACGTCTTCGAGAAAGCAGCAAAACTACTCTCTGCAGTCAACAATCAAGAGTTTGCAGTTAAAACAGCCATTACATTGCTCACAAAATGGCCTCAAAGTGTCGAAAAAGTTAAAGCTGCCCAAGCAACTGTTGACCTGGCCTTCAAGTGGAAGTCCACATGCGAGGGTGACGAGCTCCACAGTGCCACCAAAATCCACAAGATTGCCAAAGATATAAGTCAAGAGATCGCTGTTCAACACATCCTGCACTCCAGAGGCATAACAGACGAATGCTTCTCCAAGTTTATAAAAAAGCCTGCGAAATTAATTTTCCAGTTATATGAAGTTTATGGCTGTATACCAAAAGCCAATCGACCAGATGTTCAAATGATTGGTGAAGAAATTGCTGCGATTTGTGATCTGAATATTAGCAAGATCCGTGGTCGTCTTTTGGAATGTTGGCTACCTTCGTCATGTCCTGGTAGCATCAGATCTCCAGAATATTATCTCTCCGAGAATAAAGCTAAAGATAGAGACAACTTGAAGCGTGTTATGTGCTTGTTGGAAGCTGGTTCGGTACAGAACAATGCTCTTTTTCTGTTAAATTTTGCTTACAGAAAAGGTCCATCAAAGATAACCTACGAAAGCAGAGTAAGAGCAATGGAAGTCTTGTTCAATGTCGCACCCTCTGAAGTCATCGAATCTGTTGCAAATGATTCCTTGGATGGTATTAGGAATTATATGAAGTATTTGATGTATCTAGCTGAGTTGGAACACTTGCACTTACCACAAACAGTGGAGTCGTTTCAGCATTGCAACAAGGAAGGCCTTGTTAAAGGTCTCTGGAAGAATCACAAAGACAATGCCAATGCCATCTTACTTATCGCTGATATCTGCCTTGATTCCAAGATCACCGATCCACAGTTGTGGTCGAACATCCTCCGGCAACTACTCCATCTTGGCTTAACAAAGTATTTAAGCAATCTTTTGCCGTCATTAGTTAAATTCCCAATTCTCTGGCAGACATCTAACCTGGTCAAGATATGGGAAGAGCTTGCTGTCCTACCATTGCAGAAAGCTGTAAGTCCATTGTCTGTGGATGATAGATCCTCATGTCAAAAATCCATGATGCTGTTGCAAAAGTGTCCCATCTTGGTGGAAGTAAATAGCCCAAAGATTATTCAGAAATTGATTGAACTGGACATGCTTTCCCATGCTCTAGCATGTCTGTCAGTACTACCACGTGACAAGAAACCAAGTGACCTTTCAACCTTGATTTCTCCTGCAAGTGTGACTCGTGTTTTGGATATGATTGCCAAGGAACGCGCTGTTGGCGAATGTTTTCTATGCCCTGATGTGATAGAAGCCCTTGTTTTTGAGTTTGTCATTGCTTCAAATTCCTATGAAGCTTTGCAAGATTCCGAGCATTTCTTGAAATTGGCCAATTATCTCATCGCACAGAAGAAATTTGCTGGGATGGTCCTAGAGATGATTAAGCTTGATAAACTGGAGTTTGCTGTCGAGTTGGCCCAACATTATGAAGTCTATGGTTCTCCTCTGAAGAAAAAGTCTCATTTCAACGATCAAAGCTCTATGGCTGGCTTGAATGATTTGCTAACTTTCCTGGACAGTGCTGGAATCCTGGAAGATGCATTGCCATACCTACCTGATGTGGATGGTTCAGTTGTTGCAGACGAGAAACCCAAGTTAGAATCTGTTATTCTTAATCAAAGGGGTGAGCTGGTTTCTGCTAGTGATGTTGATATATATGACGTTTTTTGA

Transcript

Ppa0G142560

Protein

Ppa0G142560

MSWKVIEVDVQEEEATVNFTSIEQSAALYKVDVLAQITSDEDVCAVSIKTSTAVSAGAFSISVSNEIYIFEGEHSNFLATLSLESCVDTMAWSPDSQFLIIGDSSGTIHFFSLARRDVVFSTKLVDIDVDSSNSSPVFCNCMFTTNEESDNVNLTILSAGGCLFSFKDLPLADMSAALESKDFVFISKLKESIQMAIVEVTNVHDKASYCTATTIFGQSSIIVAGSGNEVVSIWCDQNVMDVIDCELLDGAAVRKCQMSPDGKYLVVLDEHSNLSIWDAHTLVMLSLPYHSVKDFVLTSSAATNDSHTDVVGSDGGQVVLLSDHGDGKTQLEIYELPRFKKIHSIEVSQSCSLAESNCYQERVFYTEENTSKNNNNVIELVHKCLSEASPEHRVYNLVRKKKFDSALEFSKAFGLDVEFVYKAKSSTILSDISRNISESDRNLDEKAVSVDQLIEELQDSLENVKSIEFCVDCCLKASPPRLEQVYRLLCFAKEKVGKVSGKEKHKHSKEMMEVLHAIHRLETFQMVFGDDCFSARTWQHFCSGDLLTQVMQFLSQGNMSSAAIIWRRHQSEFEDNLVAESLKSVLASIRSDLPSSTIISWLKSYLVPFVICSAKNTDALYVLASWLEKRVASLELSEKEDWPGNGLGMATLLFDVLSECAEESSNYMNFPTVQITNQVYGSALVDVSKRNSKPNPVSSLSLLVEHLTELKKLHLNYQCKIPLAEFTKETPLGIMFKMLDSVLAIELIPSVIISQIMPYGIQHGFQIDDVLLKYISNQVKQVSVASLSNTLCEARLVEVAKCIKTRDMHFEAILALMSWASVPWSGVVEEMVSKAMADDPSNQSLKQSYRLMELKKILSQYGLRGIEFSNDSHVKGVVKYILGTSNVAALEDALEIVTTYHCFSEEEVYFIRLQNLCLKGLPSQIIKLLKIISNSQVVQRFLVWVSTIIEDNPVDETNSQEHTAITEVAIHILEYLQNVGESSYEMKSTLVTLKNILALQKEFSMFVPISSYEDVATREEILLTYVREHNASIMMFINKDEERNYHHEDKISRLGNLFGLSHAQLYSRFLLHKVTNGSEIFTFSTVAACNKWLSEIMCELSSEEVFNLCIALLQKYIVQDAEVITSTETNVTVMLYCLACCAATHSKASNLVDYMELCKLCWLSTLLYVHCESGDLCMSRSICEEDPLLLWKDADWFRDNGFVLDANVALPLHQKVLEVLMLVHQHPAEHLEKMTIACRDLVLYLQENNLHEVALHYALHSIYHLLQYSAGVNELMNAAEKKSDVTLDDLQKDPKFLVLNEMGVHGVNHISNMLLNLMSKVLCNKDIDQNLALGYLCCIPEDAALQKLRCDFAVGQGHNASQAVTVFTIALYYAANFCDHSMVKSVKELYSAALWYSKVQKLNIARDCQFTGEKKEVKKVLELLLEKPGVDVKLIIEFCQSFGFELDATLHSYIQVNLVGGGTNYLSKAPNVDSPETTTSIKDFENNFLYAVSCISNVAKLLVLLQDVLMSLSMYDYERIAIVLNEIIKLSKDEDEARFGKQLEVLKILAEYKRTASPPKYEQAYQAKESSAVVKEQVVVQQKSSQERLPFHPLVYGNPWKIIGPELNDETTPKLLHLCRILKLQQDQVYVTAVNNLLSSCLFDQHKEPTVSTPIESPSFNVFEKAAKLLSAVNNQEFAVKTAITLLTKWPQSVEKVKAAQATVDLAFKWKSTCEGDELHSATKIHKIAKDISQEIAVQHILHSRGITDECFSKFIKKPAKLIFQLYEVYGCIPKANRPDVQMIGEEIAAICDLNISKIRGRLLECWLPSSCPGSIRSPEYYLSENKAKDRDNLKRVMCLLEAGSVQNNALFLLNFAYRKGPSKITYESRVRAMEVLFNVAPSEVIESVANDSLDGIRNYMKYLMYLAELEHLHLPQTVESFQHCNKEGLVKGLWKNHKDNANAILLIADICLDSKITDPQLWSNILRQLLHLGLTKYLSNLLPSLVKFPILWQTSNLVKIWEELAVLPLQKAVSPLSVDDRSSCQKSMMLLQKCPILVEVNSPKIIQKLIELDMLSHALACLSVLPRDKKPSDLSTLISPASVTRVLDMIAKERAVGECFLCPDVIEALVFEFVIASNSYEALQDSEHFLKLANYLIAQKKFAGMVLEMIKLDKLEFAVELAQHYEVYGSPLKKKSHFNDQSSMAGLNDLLTFLDSAGILEDALPYLPDVDGSVVADEKPKLESVILNQRGELVSASDVDIYDVF

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50748	Kinetochore-associated protein 1 OS=Homo sapiens OX=9606 GN=KNTC1 PE=1 SV=1
Q8C3Y4	Kinetochore-associated protein 1 OS=Mus musculus OX=10090 GN=Kntc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002425 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10493 all species →	Rod_C	Rough deal protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019527 all species →	Domain	RZZ complex, subunit KNTC1/ROD, C-terminal	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052802 all species →	Family	Kinetochore-associated RZZ complex protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15688 all species →	KINETOCHORE-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000070 all species →	Biological Process	mitotic sister chromatid segregation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005828 all species →	Cellular Component	kinetochore microtubule	Interproscan
GO:0007094 all species →	Biological Process	mitotic spindle assembly checkpoint signaling	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:1903394 all species →	Biological Process	protein localization to kinetochore involved in kinetochore assembly	Interproscan
GO:1990423 all species →	Cellular Component	RZZ complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11577	KNTC1, ROD; kinetochore-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.