Genomic Location: Contig00187:1040546...1112084
NR annotation: XP_028411958.1, splicing factor 3A subunit 3-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families
| CDS |
| Ppa0G143630 |
| Transcript |
| Ppa0G143630 |
| Protein |
| Ppa0G143630 |
| UniProt accession | Description |
|---|---|
| Q12874 | Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1 |
| Q9D554 | Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2 |
| O46106 | Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005784 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12108 all species → | SF3a60_bindingd | Splicing factor SF3a60 binding domain | Domain | Interproscan |
| PF11931 all species → | SF3a60_Prp9_C | SF3a60/Prp9 C-terminal | Family | Interproscan |
| PF16837 all species → | SF3A3 | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | Domain | Interproscan |
| PF13297 all species → | SDE2_2C | Replication stress response SDE2 C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000690 all species → | Domain | Matrin/U1-C, C2H2-type zinc finger | Interproscan |
| IPR021966 all species → | Domain | Splicing factor SF3a60 binding domain | Interproscan |
| IPR024598 all species → | Domain | Splicing factor SF3a60 /Prp9 subunit, C-terminal | Interproscan |
| IPR051421 all species → | Family | RNA Processing and DNA Damage Response Regulator | Interproscan |
| IPR031774 all species → | Domain | SF3A3 domain | Interproscan |
| IPR025086 all species → | Domain | SDE2-like, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12786 all species → | SPLICING FACTOR SF3A-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12827 | SF3A3, SAP61, PRP9; splicing factor 3A subunit 3 | - | Spliceosome | ko03041 | deepkoala |
Genes whose expression across the transcriptome samples of Paragorgia papillata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Paragorgia papillata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
