Gene detail

Detailed information of Ppa0G149440 in Paragorgia papillata

Genomic Location: Contig00195:1268347...1294185
NR annotation: XP_028395923.1, amphiphysin-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TQF7	Amphiphysin OS=Mus musculus OX=10090 GN=Amph PE=1 SV=1
O08838	Amphiphysin OS=Rattus norvegicus OX=10116 GN=Amph PE=1 SV=1
P49418	Amphiphysin OS=Homo sapiens OX=9606 GN=AMPH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005452 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF03114 all species →	BAR	BAR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR003005 all species →	Family	Amphiphysin	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46514 all species →	AMPHIPHYSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12562	AMPH; amphiphysin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.