Gene detail

Detailed information of Ppa0G150550 in Paragorgia papillata

Genomic Location: Contig00195:3404089...3427292
NR annotation: XP_028418869.1, WD repeat-containing protein 60-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G150550

ATGGCATATGATGGTGTATCCTACCGTAATGATGGCGTATTGAATGGCGTGGACTTGCCGTGTTTCCATAAAAAACAGAAAATGGCCACCCGTCATAAAAGTAAAGAGAATACATGGACTGAAAAAGACCTAACAGAAGCTTTACAGGGTGAGAAACCAAGACGTTCAAAAGATGACAGTAGACGCAGAGAATCAAGAGAGGATGGATCACAAAAACGTCATTCTAAAGGAGAGAAGCGACGCCACGAAGAAGCGTCGTTAGATCCTGGAGAGGGCAGCAGCAGGCGTAGCAACGGCACCAAGGATGATCGTGACAGAGAAAGAAAGCACAGGGATAAAAGCAGAGGCAAATTGAAAGATGATGACGATAATGAAAATAGCAGTGGTGACAGAATGAAAGAAAGGCAGCGAAGAGAAAGAAATAAAGATGAGGACAAAGACGAGAGGAGAAAGGAAAGAAACAAAGATGAATCGTCGCATCGGGAGAGAGATGAAAGTTCTCGCGGTAAAGAAAGAAGTAGAAATTCTAAAGGTGATCCTGAGCGCGAAAGGGAACGAAGGCGTGAGAGTCATGACAGGGAAAAAGAAGCAAACCGGAGGGAAAAGGATAAAGAAAGACGGAGAGAGAAAGGAGAAAGGGATAGAGACAAAGATGAAGGAAGAAGAGGCAAAGAAGAGGATGAGGGAAGAAGTGGTAAAGAAAAAGACGAAACAAGGAAAGAAAAAGATGAGAGAAGAAGAGATAAAGAAAAGGAGGAGAGAAGACGAGATAGGGAAAAGGAGGAAGGAAGGGGCAAAGAAAAAGATGAGAGAAGAAGAGACAAAGGAAAAGACGAAAGGAGAAGTGACAAAGAAAAAGAAGAGGGAAAAAGAGACAGAGATAAAGACGAGAGAAAAAGAGAGAAAGAAAAAAGCGAGAGAAGAAGAGACAAAGAAAAAGAAGAAAAGACGGGAAGTAGCGACAGGAGGAAAGATGACGATCATGAAAGGGAAAAAAGAAGGCGGAGAAAAGAAGAGGAATCCAAAGAACGGGAGAGGAGTAAAAAAGAAACTGAAAGTAATGACAAAGATGAGAGAAGAATAGAGAAAAGAGATAAAGAACGATCAGAAGAGGATAAAGAAGACAGAAGGAGACGACGGGAAGACAGGGAAAAGAGGAAACAAAAGGAACACGGTGAGAAAAGTGGTGAAAAGGAGAGTGAAAGTAGACGACACAAAGAAGGAAAGGAAACAGAATACGAAGATCATACTAGAAAGGAATCTAAGGGAAAACTAGAGCTGAGTAGTAGGTCATCGTCACTCCACAAGGAAGCAGAGATCGATGAAGAAATTGCAAACGAAGATAACTATGATGAAGATAACTATGAAGATGATTTTGAGGACTATGAAGACGATTTTGAAGATGCTGACGAGGAAGATGATGAGAATATCGAGAGTGAACATATATTTGAAGCAATCAACGCTGAAAATGATGATGTGAGAAGATCTCCTTTTCAACAAACAACTACACAGGATTCCAGAGAAGAGGTGACAGAAGTGAAAACTGTTCACAAACCATCCAAGTCTTCACCAGAAGGCAGAATCAATTTCTTTGCAGCTAAACAAAAACATGTTAACGAGTTTGTGGCTTCAAAAACGAAAAAACGTGTTCAGGAACTTCATAACCTTATTGAACTGGACGTGGCATCGTACGATATTTTTGATCTTCCTCCATTGAACGAATACGAACTTTATATAAAAAGTTACGGTCAATCAGATAGCAAGCAGGCTTACGTTCAATGTCACGATGATATTGTCGAGAAAGAAATGCAAACTGAAGATATAGAAACATCTACAAAGTGGACTCAATATCCACCAGACGATTTCAGGGGTTGTGGTGGAGACGAGAGCGTGGACAAGGATGACTTAAATTTATCCCCTCATTCTGTTGACAGTGTCAAATTGTCAAACTTCTTGCAGCAAGCCGGACAGGTTTGCTTAATTCTGTTGGAGGAGAAAATTTCTGGAAACGCAGACTCAATGTTTAAGGAAAGAAATGATATAGATATAAGTGACGGGTTTATTCAACTTGCCACTAAGTTGCCATTTATTGAAGGTCGTCGTGTTTTGGATATGAATTTTAACTCGATTCAAACACATCTTCTTGGAAATGATTTCTTACGTGGAAAAGGAATTGTTTGTTTTTGGAATGTTAATGAACCTACCCAGCCACAAAAAATTCTGTTTTGTGAGTCATCGCCGATGTGCTGTTGTTTCAGTCCAGTCAAGTCATCACTAGTGTTTGCTGGCTTGGATGATGGTTCAATAGTAATCTGGGACGTACGGGAATCATCGTCTCTCCATTCTACTGTGGAATATAAAGAAAACCAATGGGTTGTCCGTAGACCAACCTTCTCTACAGCTGGCGTATTTTCTAACGAAAATCATCTCAGCCCAGTGCTAAATATTCTTCCTATTTCTCTTACAAAAGAAAGTGCCCAAGCCTCGTTGCGAACCTCATTCATACAAGACGAACCTGGAGGAATGGCTTTCCAACTAGCTTCACTGGAGGAAAATGGGGTCGTCAATATTTGGGTTGTAATTGAACTTGAAAAACCAGATGAGGCTGGTTCAGAGAGTGATCTAGGGCTGGCCCCTGGAGGTAGAGTAAAACTCATTAAAAGTACTTCAATAAAAGTCGAATCACCCTACAGGGAAGTTTTTTCCAGTTCTTTCCTTCAAACATCCGTGATGCAGTTTTCAACTGAAGATTCAAATCATTTCTATGTGGGCACAGATCGGGGTTGGGTTGTCCATTGCACACGTTATGGAGGAAGAACGCAACCTAAAGCTTACAGAAGTGAAATTGATGCTTTTGTTACTGTTACTGCAATTGATGTCTCACCTTGGAGTATTCCGATTATGTTGGTTGGCTGTGCTGATGGCACATTGCGTTTACACGATCTTCGCAAAGAATTCATGATTCGGAGCTGGTCGGAGTCTACTCAAGGTAATCCGATAGTTCAGGTCAAGTGGTCCAGGAGTCGCCCCAGTCTCTTTTACGTTCTTGATGCAAAGTCAAACCTTTACATTTGGGATCTACAGCAGAAAAGCGACTGCCCTGTCACAACTGAATATTTTAAGCGTGGAAAATTACTGTCCTTTTCAATATCAAATGATTATGAATCACTTGGCATTGGGCTTCCAGGAAGAAAGTCTGAACTAGTTTTAAACTATGAAGGAGGCATTATTGAACTACATCGATTGAAACCAACTCTAACTAATGTCCAAGCAGATGAGCTCGATAGATTTTCTTCTCTGGTGGACTCATTTATCTAA

Transcript

Ppa0G150550

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WVS4	Cytoplasmic dynein 2 intermediate chain 1 OS=Homo sapiens OX=9606 GN=DYNC2I1 PE=1 SV=3
Q8C761	Cytoplasmic dynein 2 intermediate chain 1 OS=Mus musculus OX=10090 GN=Dync2i1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003649 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for Ppa0G150550. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR042505 all species →	Family	Cytoplasmic dynein 2 intermediate chain 1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16022 all species →	WD REPEAT DOMAIN 60	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005868 all species →	Cellular Component	cytoplasmic dynein complex	Interproscan
GO:0042073 all species →	Biological Process	intraciliary transport	Interproscan
GO:0045503 all species →	Molecular Function	dynein light chain binding	Interproscan
GO:0045504 all species →	Molecular Function	dynein heavy chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22869	WDR60; WD repeat-containing protein 60	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.