Gene detail

Detailed information of Ppa0G157910 in Paragorgia papillata

Genomic Location: Contig00227:669905...673108
NR annotation: CAB4024159.1, autophagy 5-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MQ24	Autophagy protein 5 OS=Bos taurus OX=9913 GN=ATG5 PE=2 SV=2
Q99J83	Autophagy protein 5 OS=Mus musculus OX=10090 GN=Atg5 PE=1 SV=1
Q3MQ06	Autophagy protein 5 OS=Rattus norvegicus OX=10116 GN=Atg5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007617 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04106 all species →	ATG5_UblB	Autophagy protein ATG5, UblB domain	Domain	Interproscan
PF20637 all species →	ATG5_HBR	Autophagy protein ATG5, alpha-helical bundle region	Domain	Interproscan
PF20638 all species →	ATG5_UblA	Autophagy protein ATG5, UblA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048318 all species →	Domain	Autophagy protein ATG5, UblB domain	Interproscan
IPR048940 all species →	Domain	Autophagy protein ATG5, alpha-helical bundle region	Interproscan
IPR042527 all species →	Homologous_superfamily	Autophagy protein Atg5, UblA domain superfamily	Interproscan
IPR048939 all species →	Domain	Autophagy protein ATG5, UblA domain	Interproscan
IPR007239 all species →	Family	Autophagy-related protein 5	Interproscan
IPR042526 all species →	Homologous_superfamily	Autophagy protein Atg5, helix rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13040 all species →	AUTOPHAGY PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006501 all species →	Biological Process	C-terminal protein lipidation	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0006995 all species →	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0019776 all species →	Molecular Function	Atg8-family ligase activity	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034274 all species →	Cellular Component	Atg12-Atg5-Atg16 complex	Interproscan
GO:0044804 all species →	Biological Process	nucleophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08339	ATG5; autophagy-related protein 5	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.