Gene detail

Detailed information of Ppa0G158700 in Paragorgia papillata

Genomic Location: Contig00227:1461889...1463970
NR annotation: CAB4008131.1, 40S ribosomal S5 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E988	Small ribosomal subunit protein uS7 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3
P46782	Small ribosomal subunit protein uS7 OS=Homo sapiens OX=9606 GN=RPS5 PE=1 SV=4
P97461	Small ribosomal subunit protein uS7 OS=Mus musculus OX=10090 GN=Rps5 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006057 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00177 all species →	Ribosomal_S7	Ribosomal protein S7p/S5e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036823 all species →	Homologous_superfamily	Small ribosomal subunit protein uS7 domain superfamily	Interproscan
IPR020606 all species →	Conserved_site	Small ribosomal subunit protein uS7, conserved site	Interproscan
IPR000235 all species →	Family	Small ribosomal subunit protein uS7	Interproscan
IPR005716 all species →	Family	Ribosomal protein uS7, eukaryotic/archaeal	Interproscan
IPR023798 all species →	Domain	Small ribosomal subunit protein uS7 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11205 all species →	RIBOSOMAL PROTEIN S7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02989	RP-S5e, RPS5; small subunit ribosomal protein S5e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.