Gene detail

Detailed information of Ppa0G159490 in Paragorgia papillata

Genomic Location: Contig00228:440425...453168
NR annotation: XP_028407692.1, ATP-binding cassette sub-family F member 1-like [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G159490

ATGGGTAAGAAAAAGCCTAGTAAAAAACAAATGTCTTTGGCAGCTGCTGTAGAGGAAGCTGAACAGGACAATTCCGAGACGAAACGAAATGGCGACGAACACGAAGGGCCGAAGGAGGTGAACCCTCGGAAGACCTCGAATAAAAGAAAAGAGGAAAAAAAGGAAGTTGTTGAAGACGAGTCTGACGATAGGGAGGAGTTAAAATTTGATTATACTGATGGAGAGAATAAAGAAGACGACGAAAGAGAAATGGCTGAACAAGATGTAAAACAAATGAGTCGAAAAGAACTAAAAAAAATAAAAAAACAGGAAAAATATCAGCTTGAAGCAAAAGAAATTGAGGATTCTCAGTTTTCAGTGTCTCAAAGAGAACCCTCTGGCAAAAGCACTCTGGTGGAAAATGCTTCAGACATAAAAATTGAAAAGTTTGGTATATCAGCTAGGGGCAAAGAATTGTTTGTCAATGCAACATTACAAATTGCTGCTGGTCGGCGTTATGGTCTAGTTGGCCCTAATGGAATGGGGAAAACAACATTGCTAAGTCATATTGCCAAGCGTATTTTAGCTATCCCTCCAAATATCGATGTCTTACTTTGTGAACAAGATGTTGCTGCTGATGACACTCCTGCTTTTGATGCAGTCTTGAAAGCTGATATAAAGAGATTGTCATTACTGGAAGAGGAAAAAAAGTTGACAGAACTAATTGCAGCTGGAGATGAAAATGCCATGGCAAGACTAAAAGAGGTATATGTTGAACTTGAAGCAATTGGTGCAGCTTCAGCTGAGAGCAGAGCAAGAAGAATTTTAGCTGGTCTTGGGTTTACAACTGAGATGCAGTCTCGACCAACAATACAATTTTCTGGAGGATGGCGTATGAGAGTGTCATTAGCAAGAGCATTATTTATGGAGCCCACTTTATTGATGCTTGACGAACCAACGAACCATTTGGACTTAAATGCTGTTATCTGGCTAGACAACTATCTCCAACAGTGGAAGAAAACTCTGTTAGTTGTTTCCCATGACCAACATTTCTTGGACAGTGTTTGCACAGATATCATCCACTTAAATGAGCAAAAGTTATTTTATTATAGAGGAAATTATAGTCAATTCAAAAAAATGTATTACCAAAAAATGCGAGAGCAAGAAAAAGCTTACAAAAGACAGGAAAAGCAGATCAAAGATTTGAAATTAGGTGGGAAATCCAAGAAACAAGCTGCTGAGGATGCCAAAGCTACACAGAAAAGGAAAATTGAAAAAGGCGGTGGGAGAAAAGCAACTAATGAAGACTCGATGGAAGCAGAGACTGTTGAGTTAATCAAGCGACCTAAAGAATACGTTGTTAAGTTCTCCTTTCCCAACCCTCCTCCGCTAAACCCTCCCATTTTAGGATTGAAAGATGTTATCTTTGGCTATCCCGACCAGCCAAAACTTTTTCTGAGCTTAGATTTTGGTATCGACTTAAGCTCGCGAGTTGCTGTCGTCGGAAATAACGGAGTTGGAAAAAGTACCTTTCTGAAACTGCTAACTGGAGAATTGCATATGAGCCAAGGAGAACTAATAAAGAACCATCGTGTACGCATTGGGTTTTACAGTCAACACGCGGCTGATCAGTTGAACTTAGAAGAATCTTCTGTTGAATATCTAAGGAGAAAATATAACCTGAATTACCAAGAATCCCGGAAAATACTTGGTCAATATGGCCTCAGTGGACATGCGCATACGATTAAAATTAAAGATTTATCTGGTGGACAGAAATCAAGGGTTGCATTTGCGGATCTGTCTCTAGGTAACCCGGATGTTATAATTTTGGATGAACCTACCAATAACCTGGATATTGAGTCTATTGACGCTTTGGCTGAAGCAATTAACAAATTTTCTGGAGGTGTAATATTGGTAAGTCACGACGCACGTTTAATTCTGGAAACTGAATGCCAACTGTGGGTGGTCGAAGATACCAATATTCACGAAATAGAAGGCGGTTTCGAAGACTATCGACAAGAAATTCTGGAAAAACTCGGTGAAACTCTAACTCCCTCAGCTTGA

Transcript

Ppa0G159490

Protein

Uniprot

Uniprot term	Description
Q6P542	ATP-binding cassette sub-family F member 1 OS=Mus musculus OX=10090 GN=Abcf1 PE=1 SV=1
Q767L0	ATP-binding cassette sub-family F member 1 OS=Sus scrofa OX=9823 GN=ABCF1 PE=3 SV=1
Q6MG08	ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus OX=10116 GN=Abcf1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050611	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06184	ABCF1; ATP-binding cassette, subfamily F, member 1	-	Translation factors	ko03012	deepkoala