Gene detail

Detailed information of Ppa0G159880 in Paragorgia papillata

Genomic Location: Contig00228:956136...966954
NR annotation: XP_028394972.1, glycerophosphocholine phosphodiesterase GPCPD1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80VJ4	Glycerophosphocholine phosphodiesterase GPCPD1 OS=Rattus norvegicus OX=10116 GN=Gpcpd1 PE=1 SV=1
Q9NPB8	Glycerophosphocholine phosphodiesterase GPCPD1 OS=Homo sapiens OX=9606 GN=GPCPD1 PE=1 SV=2
Q8C0L9	Glycerophosphocholine phosphodiesterase GPCPD1 OS=Mus musculus OX=10090 GN=Gpcpd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011391 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03009 all species →	GDPD	Glycerophosphoryl diester phosphodiesterase family	Family	Interproscan
PF00686 all species →	CBM_20	Starch binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR030395 all species →	Domain	Glycerophosphodiester phosphodiesterase domain	Interproscan
IPR002044 all species →	Domain	Carbohydrate binding module family 20	Interproscan
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR051578 all species →	Family	Glycerophosphodiester Phosphodiesterase	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22958 all species →	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:2001070 all species →	Molecular Function	starch binding	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0047389 all species →	Molecular Function	glycerophosphocholine phosphodiesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18695	GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1	EC:3.1.4.2	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.