Detailed information of Ppa0G160240 in Paragorgia papillata

Genomic Location: Contig00229:568374...575667
NR annotation: XP_028407653.1, COP9 signalosome complex subunit 4-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3SZA0COP9 signalosome complex subunit 4 OS=Bos taurus OX=9913 GN=COPS4 PE=2 SV=1
O88544COP9 signalosome complex subunit 4 OS=Mus musculus OX=10090 GN=Cops4 PE=1 SV=1
Q9BT78COP9 signalosome complex subunit 4 OS=Homo sapiens OX=9606 GN=COPS4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008451 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18420
all species →		CSN4_RPN5_eIF3aCSN4/RPN5/eIF3a helix turn helix domainDomainInterproscan
PF01399
all species →		PCIPCI domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040134
all species →		Family26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Interproscan
IPR000717
all species →		DomainProteasome component (PCI) domainInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR041406
all species →		DomainCOP9 signalosome complex subunit 4, helix turn helix domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10855
all species →		26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0008180
all species →		Cellular ComponentCOP9 signalosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12178COPS4, CSN4; COP9 signalosome complex subunit 4-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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