Genomic Location: Contig00229:2763081...2815132
NR annotation: CAB3983279.1, NADPH-dependent diflavin oxidoreductase 1-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families
| CDS |
| Ppa0G161460 |
| Transcript |
| Ppa0G161460 |
| Protein |
| Ppa0G161460 |
| UniProt accession | Description |
|---|---|
| Q6NRG5 | NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis OX=8355 GN=ndor1 PE=2 SV=1 |
| Q1JPJ0 | NADPH-dependent diflavin oxidoreductase 1 OS=Bos taurus OX=9913 GN=NDOR1 PE=2 SV=2 |
| Q9UHB4 | NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens OX=9606 GN=NDOR1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001643 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00175 all species → | NAD_binding_1 | Oxidoreductase NAD-binding domain | Domain | Interproscan |
| PF00258 all species → | Flavodoxin_1 | Flavodoxin | Domain | Interproscan |
| PF00667 all species → | FAD_binding_1 | FAD binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028879 all species → | Family | NADPH-dependent diflavin oxidoreductase 1 | Interproscan |
| IPR017927 all species → | Domain | FAD-binding domain, ferredoxin reductase-type | Interproscan |
| IPR001433 all species → | Domain | Oxidoreductase FAD/NAD(P)-binding | Interproscan |
| IPR001709 all species → | Domain | Flavoprotein pyridine nucleotide cytochrome reductase | Interproscan |
| IPR008254 all species → | Domain | Flavodoxin/nitric oxide synthase | Interproscan |
| IPR017938 all species → | Homologous_superfamily | Riboflavin synthase-like beta-barrel | Interproscan |
| IPR039261 all species → | Homologous_superfamily | Ferredoxin-NADP reductase (FNR), nucleotide-binding domain | Interproscan |
| IPR029039 all species → | Homologous_superfamily | Flavoprotein-like superfamily | Interproscan |
| IPR023173 all species → | Homologous_superfamily | NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily | Interproscan |
| IPR003097 all species → | Domain | Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding | Interproscan |
| IPR001094 all species → | Domain | Flavodoxin-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19384 all species → | NITRIC OXIDE SYNTHASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003958 all species → | Molecular Function | NADPH-hemoprotein reductase activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0010181 all species → | Molecular Function | FMN binding | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
Ppa0G161460.Genes whose expression across the transcriptome samples of Paragorgia papillata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Paragorgia papillata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
