Gene detail

Detailed information of Ppa0G161900 in Paragorgia papillata

Genomic Location: Contig00232:577132...587698
NR annotation: CAH1239454.1, MFHAS1 [Branchiostoma lanceolatum]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G161900

ATGAAGCAGCTAGAGGTACTTGGGTTATATTACAATGATTTCCACGATCAATCAATTTCTTTTTGTGAACTTGTCAAACTCAAACGACTAGCAATTTTCGCTTGTAACCTGCATACATATCCACAAGGGCTTGAAGATCACACCAGTTTGGAAGCTTTAAATCTTGGCGACAATCCCAAGCTTGGTAAGCAGCCATTTTCAATTACTGGGCTCAAGAATTTGAAAGAGCTTAGAATGAGTTCATGTGCCCTTGACACAGTTCCTGATGGTCTTGAGGATTGCGTTAATTTAGAAGATCTGGTCCTTTCCTTCAACGCCAACCTTGGTAAGCTGCCATTTTCAATTGCTAAATTGAAGAATTTAAGATCGCTGGATATGATGAAGTGTAGTCTTGAAAAATTCCCGGATGGTCTCGAGAATTGCGTTAATTTAGAAGATCTGAACCTTTCCCTCAACGCCAACCTTGGTAAGCTGCCATTTTCAATTCCTAAATTGAAGAATTTAAGAAAGCTGAATATGTCGAGCTGTAGTCTTGAAAAATTCCCGGATGGTCTCGAGAATTGCGTTAATTTAGAAGATCTGAACCTTTCCAGCAACGCCAACCTTGGTAAGCTGCCATTTTCAATTGCTAAATTGAAGAATTTAAGAAAGCTGGATATGTCGGACTGTAGTCTTGAAAAATTCCCTGATGGTCTCGAGAATTGCGTTAATTTAGAAGATCTGGTCCTTTCCTACAACGCCAACCTTGGTAAGCTGCCATTTTCAATTGCTAAATTGAAGAATTTAAGAAAGCTGGCTATGTGGAGCTGTAGTCTTGAAAAATTCCCGGATGGTCTCGAGAATTGCGTTAATTTAGAAGATCTGAACCTTTCCAACAACGCCAACCTTGGTAAGCTGCCATTTTCAATTCCTGAATTGAAGAATTTAAGAAAGCTGTATATGTCGAGCTGTAGTCTTGAAAAATTCCCGGATGGTCTCGAGAATTGCGTTAATTTGGAAGATCTGAACCTTTCCTACAACGCCAACCTTGGTAAGCTGCCATTTTCAATTGCTAAATTGAAGAATTTAAGAAAGCTGAATATGTGGGACTGTAGTCTTGAAAAATTCCCGGCTGGTCTCGAGAATTGCGTTAATTTGGAAGATCTGAACCTTTCCGACAACGCCAACCTTGGTAAGCTGCCATTTTCAATTGCTAAATTGAAGAATTTAAGATCGCTGCGTATGTGGAACTGTAGTCTTGAAAAATTCCCGGATGGTCTCGAGAATTGCGTTAATTTAGAAGATCTGGACTTTAGGAACAACGCCAACCTTGGTACACCACCACAAGTTATTTGTGAAAGTCCTAGTGCAATTTTGAAATATTTCCAAGACATTAAAAAGTTTGGCGAAGCTCATTCTAAACGGCTTCGACTGTTGGTGATTGGAAATACTGGTGCTGGAAAAACAAGTCTGGTTAATGGATTGTTGTTGGGAGAATCAAGGTTAACCACATCAAAGGAGAGAACAGAAGGGATTGAGATCAGAAAGTGGTTTCCAGATCCTGCAAATAAGGATCTTGAGCTTGAAATCTGGGATTTTGGTGGTCACATGGAGTACCAAACTGTGAGTCATTACTTTATGGAAGAAAAGTCTTTGTTTCTTTTGGTTGTGGATATTTCAGAGTATGAAATGACTGATGAATCATATTATGCAAATACTGGCAAGTGGATTGATGAAGTAAAGAGCATTGTACCGCGACCTGTTGTTGTTGTGGCTGCAACAAAATGTGACCGTATTCATTCAAGCCTTGTCAAAGATAAGTGTCGTCAAATGTCAACCGAAATTGTCAAACAAGAAGATGTGGATATAAAGTTAATAGAAAGTGATATAAAAAAGTTGGAGGGAACCTCGGAAAGTGAAGATGAATCCTCGGAAGTTGGAGATGAAGCTTCGGAAATCAGAGATAAATCCTCGGAAGTCGGAGATGAAGCATCGGAAGTAATTGGCGATGAAGCTTCGGAATTCCTAGCATTTGAAAAGCTTGAAGAGTGGTTCTGTGAAAACAATCAAGAGTTCAAAGAAGTTTTTGACAGGAAAGAGACCTTGAATTCAATTATTCTCTATCTTGTTGGCCTTGGAAAACTTGTCTTTCTAGATCCCCAATGGCTTATCATGTTGATCAAAGATGTCGTTCATCATGATTTGCCTTCTCACCTGCAATACAAAGAAGTTTTTAAAGCTTGTAACATGGATGATGTGAAATTTGAAAAAGAGAAGAAAGAACTGATTGATCACGGGCTGCTTTCAAAATCTCTCTTGCGATGCATTTGGTATGATGCTGTTCCTGAAGAAGCTGACTTTAAGAAGCTTGCTCGTCTACTCTATTATTTTGATGTGGGTTATGAAATGACGCCGAAAGAAGCTGAGATTGAGGATAAAGAAATCAACAAGAGTAAAATAAAAAAATGGTCGTTTTGGGCTTGTTCAGGCCGGAGAGGGATAAAAATGCCATGCGAGCTTAATGCTAATGTCTACATTGAAATATGTACGGAGTTGAACAAGCCAAAAAAGGGAAAAGATTACATAACGTTGGCTGGAAACTTGGGATACGACATAAAACATGTAAACTCATTTGAACTAAAAGACGATCCAGCACATGCTCTCTTGTCTCATTGGGGAACTAAAACTGGGAATGACGTTGAGAAGCTGATTGAGATCTTAAGAACGATGGAAAGGGATGACGTTGTTGAGATACTGGGTGGGAAAAAAGAATCCTGTGATTTGAAACGGATTATCCCAGAGTCTCTCGTTTCCCGGGTGGGGAACGTGGGCTCTGGGAACGAGATTGCGTATGATCCTGAACTGTGTTGTGTTGTTCAAAATATTCTGTTTCGAAGACATGAGGAACTAGTGCGTTTATACATGCAAGAGCCTAAACTGCTTATTAATACATCTCGAATTGCGCCTGGTCCGTTGGTTTGGGGAAACTAG

Transcript

Ppa0G161900

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001343 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR052595 all species →	Family	Leucine-rich repeat-containing protein 69/Receptor-like	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48057 all species →	LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13730	inlA; internalin A	-	Bacterial invasion of epithelial cells	ko05100	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.