Gene detail

Detailed information of Ppa0G162910 in Paragorgia papillata

Genomic Location: Contig00234:856178...887175
NR annotation: XP_020896232.1, endo-1,4-beta-xylanase 3 [Exaiptasia diaphana]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G162910

ATGCAGAGTTTGAGAGTATTCTCAAAATACTACAACCCAACTTTAAATTATGTACTTTTGTTGTATTTTAAACAGGAAACAGATCTGTCAAATCTCATTCTTCATAATAACAGTGTTATACTGCAAAGAGACAGAAATTTGCATTTAGTCGAAGAATGTGCAAAATGGACGCAAGGACTTGGTTATTCAGTATTTTTTGTAAACGTTCTGGATAAAATGCAATCACCATGCCTTACGGGTGCACATGCCACACATTTATATACAAATTATGAATCTTCTATGATTAGGAACTGCGATAGTTTGGCTAGTTCAACGGAAAGAACATACGTTTATAGCGTAATAGTTCAGTCTCCTGTTATCAACAACCAAGATTATAGGAAAATTGCTAAACAACTAGATGCGATTGGCAAACTAGAAAGTGCAACTACGGGAAGTTCGGATACATCGACAAAACCAAATGAAGATAACAACGAATCAGTACAAAATATAACCATGCAAGATCTTGTTGAACCATGGTTGAAATCAATGGATACTCCCGACAAGAAAGGCAAAGAAATCGATGAGCTCACTTTCTTTAATGGTTATGGTGATATTGTAACTGAAAATATTCTACGAAATCCAAGTTTTGAGGACACATTGGTACTAAATTCTCTAAGTGGATGGATATGCCAAGGTGAATCTAATGAGCCAAAAAGTGGAATTATTTCCCAATACTCTTCAGACCATCACGGCGAAGGGCAGTTTAGTGGAAGATGCAGTGAACGAGTGGCTAATTGGGCTGGACCAGGACAATACATTGGTCGTTATTTAAAACATGGGACAAATTACAAGTTCTCAACTTGGGTTCGTTTAGAGACAAAACAGTACAAAAATATTAATGACAAAAAACTTATCGAAGTGTGGTTACGGTATCGAGACAGAGAATCAAGTAAACTCCATGCCAAAATGTTAGCCAAAAATTATCTGCTTGCTAACGATCCTACGTGGGAAAACATAATTTCGGATTTTCATGTTCCCAAAATAATGAAAAAGATCAGCTTTGTTTTTCTTTACATGAAAGGACCAAGTCGCGATATTGATATTCTGATAGATGATTCAAAACTTGTGCCAGTCCCTTCAGTTGACAACTGGAGACAAGCAAGCGATGCCGCTATCGAGAAAATTCGAAAAAGAACTGTCAAACAAAGAAAGCATTTGTTCGGTTTCGGCGCAGCAGTGGGTGAATCAATCCTTTCAAATAAAGAATATCAGGAGTTCTTTGTTGATAACTTTGAATGGGCGGTATTAGAAAACGCTCAAAAATGGACAAAAACAGAGCCAGAAAAGGGATATTTAACTTATGAAAGGCCAGACCAAATGGTAAATTTTCTCTTAAATAACAATAAGACTATACGTGGTCATTGTATTTTCTGGGATGTTCCTGAAAGTCAACCTAAATGGCTTTATCAGTTACATCCTCGTGAATTCAGAGAAGCTCTCGAAAAACGTTTAGAAAATATCGTCCTCAGATATAAAGGAAAATTAAACCACTGGGACGTAAATAATGAAATGCTTCATGGCAACTTTTATACAAAAACACTCAAAGACCCAAGCATTCGACAGTGGATGCATCATAAAGTGAATGAACTTGATCCTGACGTAAAGCTATTTCTCAATGATTTTGATGTAGTTGAAAATAGCTTACTGACAAAGGCGTACGTTGACCTCGCAAATGAATTATTAAAGCAGAATGTTCCCATTGATGGTATTGGGGCCCAAGGTCATTTTACTGGAGTTGTCAATCCAGTTTTACTGAAGGATCGCCTGAACTTGCTCATGGAAACTAACTTACCTATTTGGCTAACTGAAGTCGATATAGTAGAACCAGACCCCCACAAGCGCGCTATAAGTTTGGAAAATGTTATGCGAGTGGGGTTTAGCCATCCAGGCGTACACGGTATTATGTTATGGTGTTTTTGGAACAAAAGTTGCTGGAGAGGAAAAGCTACTGGATTAGTGGAAGAAGATAATTTTAAGTTAACCGAAGCTGGCCGAGTTTATCAAGATCTTCGTCGACAATGGACGACAATAGAGGAACTAAACTCATCAAACGTCATTGAGAATGAAGGGCATTTCGTATTTCGTGGTTTTCATGGTGACTATGACGTGTATATTCATTTGCCAGATGGTCAGATTATTGCGAAAAAATTTACAATTAAACCAGGAAACTCAGATTTACCTCTTAAAATACGAGTTTATGTGGCAAGCAGTGCTTATAATTTTCCTTTTTTCTCTTGTCTAAGTTCTAACTGCATGCTTGCATGTCAAAACTAG

Transcript

Ppa0G162910

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3DH97	Anti-sigma-I factor RsgI6 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsgI6 PE=1 SV=1
F4JG10	Endo-1,4-beta-xylanase 3 OS=Arabidopsis thaliana OX=3702 GN=XYN3 PE=2 SV=1
A0A1P8B8F8	Endo-1,4-beta-xylanase 5 OS=Arabidopsis thaliana OX=3702 GN=XYN5 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00331 all species →	Glyco_hydro_10	Glycosyl hydrolase family 10	Domain	Interproscan
PF02018 all species →	CBM_4_9	Carbohydrate binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001000 all species →	Domain	Glycoside hydrolase family 10 domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR044846 all species →	Family	Glycoside hydrolase family 10	Interproscan
IPR003305 all species →	Domain	Carbohydrate-binding, CenC-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31490 all species →	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016798 all species →	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G162910.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.