Gene detail

Detailed information of Ppa0G162910 in Paragorgia papillata

Genomic Location: Contig00234:856178...887175
NR annotation: XP_020896232.1, endo-1,4-beta-xylanase 3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G162910

ATGCAGAGTTTGAGAGTATTCTCAAAATACTACAACCCAACTTTAAATTATGTACTTTTGTTGTATTTTAAACAGGAAACAGATCTGTCAAATCTCATTCTTCATAATAACAGTGTTATACTGCAAAGAGACAGAAATTTGCATTTAGTCGAAGAATGTGCAAAATGGACGCAAGGACTTGGTTATTCAGTATTTTTTGTAAACGTTCTGGATAAAATGCAATCACCATGCCTTACGGGTGCACATGCCACACATTTATATACAAATTATGAATCTTCTATGATTAGGAACTGCGATAGTTTGGCTAGTTCAACGGAAAGAACATACGTTTATAGCGTAATAGTTCAGTCTCCTGTTATCAACAACCAAGATTATAGGAAAATTGCTAAACAACTAGATGCGATTGGCAAACTAGAAAGTGCAACTACGGGAAGTTCGGATACATCGACAAAACCAAATGAAGATAACAACGAATCAGTACAAAATATAACCATGCAAGATCTTGTTGAACCATGGTTGAAATCAATGGATACTCCCGACAAGAAAGGCAAAGAAATCGATGAGCTCACTTTCTTTAATGGTTATGGTGATATTGTAACTGAAAATATTCTACGAAATCCAAGTTTTGAGGACACATTGGTACTAAATTCTCTAAGTGGATGGATATGCCAAGGTGAATCTAATGAGCCAAAAAGTGGAATTATTTCCCAATACTCTTCAGACCATCACGGCGAAGGGCAGTTTAGTGGAAGATGCAGTGAACGAGTGGCTAATTGGGCTGGACCAGGACAATACATTGGTCGTTATTTAAAACATGGGACAAATTACAAGTTCTCAACTTGGGTTCGTTTAGAGACAAAACAGTACAAAAATATTAATGACAAAAAACTTATCGAAGTGTGGTTACGGTATCGAGACAGAGAATCAAGTAAACTCCATGCCAAAATGTTAGCCAAAAATTATCTGCTTGCTAACGATCCTACGTGGGAAAACATAATTTCGGATTTTCATGTTCCCAAAATAATGAAAAAGATCAGCTTTGTTTTTCTTTACATGAAAGGACCAAGTCGCGATATTGATATTCTGATAGATGATTCAAAACTTGTGCCAGTCCCTTCAGTTGACAACTGGAGACAAGCAAGCGATGCCGCTATCGAGAAAATTCGAAAAAGAACTGTCAAACAAAGAAAGCATTTGTTCGGTTTCGGCGCAGCAGTGGGTGAATCAATCCTTTCAAATAAAGAATATCAGGAGTTCTTTGTTGATAACTTTGAATGGGCGGTATTAGAAAACGCTCAAAAATGGACAAAAACAGAGCCAGAAAAGGGATATTTAACTTATGAAAGGCCAGACCAAATGGTAAATTTTCTCTTAAATAACAATAAGACTATACGTGGTCATTGTATTTTCTGGGATGTTCCTGAAAGTCAACCTAAATGGCTTTATCAGTTACATCCTCGTGAATTCAGAGAAGCTCTCGAAAAACGTTTAGAAAATATCGTCCTCAGATATAAAGGAAAATTAAACCACTGGGACGTAAATAATGAAATGCTTCATGGCAACTTTTATACAAAAACACTCAAAGACCCAAGCATTCGACAGTGGATGCATCATAAAGTGAATGAACTTGATCCTGACGTAAAGCTATTTCTCAATGATTTTGATGTAGTTGAAAATAGCTTACTGACAAAGGCGTACGTTGACCTCGCAAATGAATTATTAAAGCAGAATGTTCCCATTGATGGTATTGGGGCCCAAGGTCATTTTACTGGAGTTGTCAATCCAGTTTTACTGAAGGATCGCCTGAACTTGCTCATGGAAACTAACTTACCTATTTGGCTAACTGAAGTCGATATAGTAGAACCAGACCCCCACAAGCGCGCTATAAGTTTGGAAAATGTTATGCGAGTGGGGTTTAGCCATCCAGGCGTACACGGTATTATGTTATGGTGTTTTTGGAACAAAAGTTGCTGGAGAGGAAAAGCTACTGGATTAGTGGAAGAAGATAATTTTAAGTTAACCGAAGCTGGCCGAGTTTATCAAGATCTTCGTCGACAATGGACGACAATAGAGGAACTAAACTCATCAAACGTCATTGAGAATGAAGGGCATTTCGTATTTCGTGGTTTTCATGGTGACTATGACGTGTATATTCATTTGCCAGATGGTCAGATTATTGCGAAAAAATTTACAATTAAACCAGGAAACTCAGATTTACCTCTTAAAATACGAGTTTATGTGGCAAGCAGTGCTTATAATTTTCCTTTTTTCTCTTGTCTAAGTTCTAACTGCATGCTTGCATGTCAAAACTAG

Transcript

Ppa0G162910

Protein

Uniprot

Uniprot term	Description
A3DH97	Anti-sigma-I factor RsgI6 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsgI6 PE=1 SV=1
F4JG10	Endo-1,4-beta-xylanase 3 OS=Arabidopsis thaliana OX=3702 GN=XYN3 PE=2 SV=1
A0A1P8B8F8	Endo-1,4-beta-xylanase 5 OS=Arabidopsis thaliana OX=3702 GN=XYN5 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00331	Glyco_hydro_10	Glycosyl hydrolase family 10	Domain	Interproscan
PF02018	CBM_4_9	Carbohydrate binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001000	Domain	Glycoside hydrolase family 10 domain	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR044846	Family	Glycoside hydrolase family 10	Interproscan
IPR003305	Domain	Carbohydrate-binding, CenC-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31490	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016798	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan