Gene detail

Detailed information of Ppa0G164420 in Paragorgia papillata

Genomic Location: Contig00240:249075...265864
NR annotation: XP_028396006.1, AT-rich interactive domain-containing protein 4B-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G164420

ATGGCTGGAGAAGAACCTCCATATTTGACTGTTGGGACAGAGGTCAGTGCCAAGTATCGTGGGGCCTTTTGCGAGGCAAACATAAAATCAGTTAAAAAGATGGTCAAATGTAAGGTTACCTTTGACAAAGGCAATGGGAGCAGTACATTTACAGATGATTGTATTAATGGTGTGCTAAAGGTGGGATCAGATGTAGAAGTTAAGCTTCCAGATGGCCAGGATATGACTGGAACACTTGTGAAGATTACAGATTCTAGTGCTTACACCGTGGTTTTTGATGATGGAGATGAAAGGACTTTAAAAAGAACTTCATTATGTTTGAAAGGTGAAAAGCATTTTAATGAAAGTGAGACTTTAGACCACTTGCCATTAACAGATCCCGAAAATTTTGGTACACCTGTCATGCAGCAAGGAAAAAAGTCTAAACGAGGAAGAAGGCACTCCGCGAGTGTTGATGCCGATAAGGGTAAAGAAACAGATGAAATGCCAGCAAGAAAAAAATTGCTACAGAGTGAAGAAAATGTTGACAAGGTTGTTATGGTAGACATCACTGAAAAGAAGAAAACCTTTCACCTTCCTGCATTGCGGGTTCCTTCTGTTGGTTCATGCTATGGTGAGCTCAAAAGTCCTGAAAATGTTCTTGTGAGATCATTTAAGGATGGGAAGTACATCGAAGTTCATCCAAAGGATGTCAAAGAATTTTCAAAAGAAAGTGTTGTTAATTCCAGTTTTCCAAAAGCTGAAAGTGTGCCCTTAAAGTTGGCTGTAGAACATGCTGTTAAATATTTGGAAACGAAACAGTTACCAAGTGACTGGAATGAACAAAGTTCAAAACCTGATGAAACACCAAAGAGCTGCAACAGCCATTCTTCTTCTGATGACGAGTCTGAGGAGGACGAGAAAGAAAGAGATGAGTTTATGGCTAGTTTAACTAAATTCCTCGAGGAAAAAGGAACTCCACTTGTGCGTTCTCCAGTACTGGCTCATAGAGACCTTGATTTGTATAAATTATTCAGAATTGTATCGCAGATGAATGGTATGGACAAGATTAAGTCGTGGCAGTCGGTCTATTTAAAAATGGATACTCCAGTCGTGACAACCACGGGATCTTACCATATAAAGAATGCTTACAAACGGGATGTTGTAAAAAAGGATGACGTCAAAAAGGACGACGTGGGAAACGACGACGTAAAAAAGGATGCCGTTAAAAAAGACGACGCCAAAAAGGAAGATATTAAAAACGGAGATGTGGAAAAGGAAGATGTGAAAAAGGGAAATGTGAAGAAGGAAGATGTGAAAAAGGAAGATTTGAAAAAGGAAGATGTGAAAAAGGGAGATGAGAAAAGGGAAGATGTTAAAAAGGAAGACGTGAAAAAGGGAGATGGGAAAAGGGAAGATGTGAAAAAGGAAGACGTGAAAAAGGGAGATGGGAAAAGGGAAGATGTGAAAAAGGAAGATATTAAAAAGAGTTGCATGAAAGAAGAGGTGGAGGAGAAGATGGAACAAGATGACGATGATGAACCTGAAGATGCGGTAGACGTGGTCAACAGTCCAAGCGGGACGTCGGATTCGGTAGACAGCGACGTGGGAGAGGAGGAGAAAGCGGACAAGAAGACGAGTGGTGGAAAGACGGGAGCTGACGAAAAGATGGGAGGAAAGGGGCACGGAACGAGTAATGTTGGTTGCAAGTTGGAGTACAGGTTGAATGATCGAATTGATGTGAGGTATGGTCGTGGACGAAATGCAACGATTTATCATGCAAAGATTACGACTGTGGATCCAGCCGCCGAAGAAGGACTCTATTACTCGGTTCACTATGCAGGCTGGAACGCTAGGCACGACGAATGGATCGGCCCTGAACGGATTATCGGCAGAGACCAGAAGCAAACGCGAACGAGAGCCAGTAAAGAAGCAAGGAACAACAAAGCACCCCCAAAGTCCACTATCAAGCCGACACCAAAACCCATTGCCAACAAGAACGGAGCCGTTGAGAAACACGCGGGAAAGTTAACGGCTGGGAAAAATCGAAAGAGAACTCCTTCGCCAACGCCTAACGTCGCCCCGAACAAGAATGGGAATGGGAAGGCTAGTAAAAGCCGCAATGAAAAAGTTACTGTGGATTCCTTGGATCTCGCTGGAGGTGACAAGCGGAAGACTCCGCATCCCCCGAACCCAAAAGCGGCCATCGACGATGCCAACACGCCCGACTTGACTTGCACCGAGCAGTTGTCGACGAACTGCGACTCCCCCAATCCGTATACCGGCGAGTACCCGAGGAATGACGGGTTCTTTAGTAACGGTATTAGCGGCGAGGAGCTTGGAAGCGAGACCAAGGAAAAGGACAGCTCGTCGTCCGTGGATGAATCCAAGTCGGAGAAGTCGCCGAATCGCAAAGCGACATTTCGGCGGGAAAGGAAAACTAGAGCGCCCAGTTCACAGTCTTCGTACGAGGGCAGTGAATATCCGAATGGGTCTTCTAATGGAACGTCAGGGCCGATCATGCCATCACCGACAAGAACAGCGAAGTACAATTTTACTGAAGATTTAGACGAGTTACTCAAGAAAGAAGAGAGCTCTGAAAGAATACGGCTGCTGCAAGAGAAAATTAAGGGTATTCGTAAAGTTTATGGCGAACTAAAATCTGAGGTCGCCAACATTGACAGAAAAAGAAAGAGAAGGCAAAAGAGGAAAAGGGAAGAAGAATTATCAACGGAGGAAGGATCCACCCGGTCTCCCTCTCACTCGTCACCGCTGACCACGACGAACGAAGAGAACACCGCACCTGCCGCGAACACCCCTCCCGCCGTGGAGTGTAGATAG

Transcript

Ppa0G164420

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2CG63	AT-rich interactive domain-containing protein 4B OS=Mus musculus OX=10090 GN=Arid4b PE=1 SV=1
Q4LE39	AT-rich interactive domain-containing protein 4B OS=Homo sapiens OX=9606 GN=ARID4B PE=1 SV=2
Q9JKB5	AT-rich interactive domain-containing protein 4B OS=Rattus norvegicus OX=10116 GN=Arid4b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11717 all species →	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan
PF08169 all species →	RBB1NT	RBB1NT (NUC162) domain	Domain	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR051232 all species →	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan
IPR025995 all species →	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR012603 all species →	Domain	ARID4A/B, PWWP domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964 all species →	RBP-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G164420.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.