Gene detail

Detailed information of Ppa0G165630 in Paragorgia papillata

Genomic Location: Contig00240:1403788...1404669
NR annotation: CAB4005417.1, transcription initiation factor IIE subunit beta [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02186 all species →	TFIIE_beta	TFIIE beta subunit core domain	Domain	Interproscan
PF18121 all species →	TFA2_Winged_2	TFA2 Winged helix domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003166 all species →	Domain	Transcription factor TFIIE beta subunit, DNA-binding domain	Interproscan
IPR016656 all species →	Family	Transcription initiation factor TFIIE, beta subunit	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR040501 all species →	Domain	TFA2, Winged helix domain 2	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12716 all species →	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0005673 all species →	Cellular Component	transcription factor TFIIE complex	Interproscan
GO:0001097 all species →	Molecular Function	TFIIH-class transcription factor complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03137	TFIIE2, GTF2E2, TFA2; transcription initiation factor TFIIE subunit beta	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.