Gene detail

Detailed information of Ppa0G171690 in Paragorgia papillata

Genomic Location: Contig00252:561212...580066
NR annotation: XP_028414420.1, leucine-rich repeats and immunoglobulin-like domains protein 2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G171690

ATGGTATTTCAACTACGACAGTCGATTTCAGCAATGTGGATGTTAATTCTTCTCCGTTCTCTTTACCTCGCGGTCGCACTGGCTCAAACCACGCCGCCTGAATATTGTCCTAGGATTTGTGATTGTTCAGGATCGATCGCGAAATGTATCGAGCGGGATTTGAAGGGAATTCCAGACGACGCTCAAATCAACTATAAATGCTTGATAATAATTTCAACGTGCTGGATGTGTTTATTGTCTAAGCTTGACCTTTATCGATGTTTGCATGCTAGCCACGTTCGAGAACGGAAGAACGGCCAAGGAAGAGGATCTCTCTTTCTCCACAATATCCTAATACTCTTAATTCCCTGGTTGCCACAAGATTTGAGTGGAAATTATATTTCCTCAATACAGAATGATACATTTCTTCAATTTACAAAATTAATTGAATTAAATCTTAATTATAATGATATTGAGGATGTTTTCAAACTTGGAAAATTTCCCAAGTCACTCCGCCACTTACACCTAAAAGGCAATAAAATAAATATACTACCTGGAAAATGGGACCAGTTTGCAAAACTGGATGTCAGTGATAACAGAATAACTAGAATTGGTAATGGTACCTTTGGACGCAGTACAGTGTTAAATGAATTGAATCTTAGTAACAATCAAATCACAACCATAGCTTTTCATGCTTTGAGAAATCTTCCATCTCTCCAGACACTGAGACTGGATCGGAATAATTTAACAAATGTTCCAAATCTTTCACTCAAATCTTTAGTGACTTTAGACCTAAGCAGTAATCAACTGGATAGCATCCCAGTTGTGTTTTTACGCAAACATACATTATTTACAATGACACCTTTACTTGAAACTTTGAAACTTTCAAACAACAAGTTCAAATCATTGTTAACAGCAACGTTTTTTGAGTTAAAACTTAAAGCATTATATTTAGATAATAATTTACTGACACAAATAAACGGTGGTTGGCTGTTTGGATTAGATGAATTGGAGCATTTACATCTTCAAAACAATCAAATTGCAAACATCAGCTCCCACAGTTGGAATAATCTTTGTTGCAAAAAGATAAAATACTTAAACTTGGCTAATAACAAGTTGAAACGTATAACGTTGGATGTCACGAAAAAACATAGTTATGGTGGCACGTTCTCGCACCTGAATTCTCTTGAGTTTTTAAATCTGAGTTCAAATGGAATATTTGGGATTGTAGATAATTCATTTAAAGATCTTCAAAAACTTCAGGTTTTGGATTTAAGTAAAAACAAACTGTCTTGGTCGTCATATGATTCCAACGGAACATTCAGAGGTTTACAAAGACTGAGACACCTGGATATGAGAAATAATCCCATTGAAGAAATTAATAGAGACGCCTTCAGCCCATTAACATATCTCCGAGACCTGCGCATGAACAGTCGCTCATTGTACTGTAGCTGTAAATTGCGATGGTTCTCCCAATGGCTAGCGACAAAGAAGTTCTCCCGGTCAGTCGTGCTTAAATGTCGACAACCAAATAAGTTGTCTGGAAAACGTTTGTCAAAAATCGCTCCAAAAGATCTCTTGTGTGACTCTGCACGTCCCGAGATCACAGAACATCCGGAGTCTCTGACAGTATTGAAAGGAGACGACGTCCAATTAAGTTGCACCGTAAAAAACGGATCAATGGAAGGGATCAAAATAATTTGGAAAAAGGATATGAAGAATGTTCATATTGATTCCAATCATACCAAAGTGAAAGAATACACACAGGTGACTGACAACAAGTTTAAATTTTACAAAAGTGTTTTGCTTCTTCGTGATGTCAACGAGGCTCAAGATGGCGGCTTGTACCAATGCGTGGTCGTTACACGCGTGGGGGAGCTCAAGTCACGCAAAGCAAGATTACAGGTCTTTGTTCCTCCAAGATTTACGAGTAAACCGGCAGAAAACCTGATTACAACTCTCGGGGGAGATGTACGCTTTAACTGTTCGGCCAGCGGTTATCCATCACCAGCGATCTCCTTCAACAAAGTGCAACGTTCGAAGTTGTTCAGTCTGAAAGGACGCTTGGACCTGAGTGAAAGCGAGACATTCCTAATTAGGAACTTGACAATGGATGACGTTGGTTTGTACAGATGTTTCGCAAAGAGCGACGCTGGCTTGGTCAACACAAGTTTTCACATTAATATTTTTAGTAAACCATTTCCAATGCATGAGATGTTAGACAAGGTCGCTTTGCTTCACGATTCTGTGATGTTTGTGTGTGCTATGAAAGGTTGGCCCACTCCACATTACAACTGGTTCAAAGATGATAAACCAATGAATACAACTGCAAGCAATGTTCAACTTCGCCGTGAACTAAATGCCGAGTATCTTGTGATATTACATGCCAAGTATTCTGATGCCGGGCTCTATAAGTGCCAGGTGAATAATAGTTTGGGTACAACTGAGTTAATCAGTCGATTGGATGTTGTCAAAGGTAACGTTTCCGTTGTTTATTTGTTCAAAGAACGCGTTACTCGCAACACCTTAATTGGCGCAGTGGTTTTTGCTACTGCCGCTACCATGGTTATTACGATACTCGTCTGCATCGCCGTGCTCCACGCTGTCAGTCGCCGGGGGCGTGGCTTGTGTACTAACCGGCGTAAAAACACCGGCGTAGTTGCCTTGGGTTCATTTGAAACAGTGGCGGAGTCAGACAAACAGGAGTATATTCAAATGTCGGAAAATTCTCCCAGCGAATCTCCACGTTCGTCGTCGACATTCGTCACGTCGGAATCCCACACGCCTTCCGATTCCCACTTCTTACAGACGTCGAGTTCCGATAGTGGCTCGACGAAGGAGAATCGTGAAGGATCGTACGACGGTCGTCAGTCATCCGGGGTATGTTCGATGAACAGTAGTACAAGTTCGCTAACGTCGACCTCGACGAACCAGAGAAATACGAACCACAGAAATACGTTCCCTTTCTCGAATACATCCACCGCATCATACCCCTATCCCACTGCAACGTATGTTTACGATGCCAGCGATGACAACACGTCGTGTGCCAGTAGAAACCATCGCCCAGCGCGACAAACTTTGTTCTTGACATACAACGAGCAACATTTTCCCGCCAGACGGAAACACAAATCGCCACGATCACGTGATCGTCATCACGCGAATAAACGACGTAACGTACAAGAGCAAGAGAAGATATACAATAAAGTAACAGATGATAAGCTAGTTGGCGTCAACACAGAGTCAGACGTCACTACTATATAG

Transcript

Ppa0G171690

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P34082	Fasciclin-2 OS=Drosophila melanogaster OX=7227 GN=Fas2 PE=1 SV=1
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
Q8NDA2	Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005677 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR050467 all species →	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842 all species →	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G171690.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.