Gene detail

Detailed information of Ppa0G171760 in Paragorgia papillata

Genomic Location: Contig00252:662590...685569
NR annotation: XP_028398343.1, Fanconi anemia group D2 protein-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G171760

ATGGTATTCAGTAGCTTCTACCCTGAAGAAATTTGGGTTCAACTCTACTATACTAATCTCTACGCTATGATAAACATTGATATGTTGCAAGCCAAGAGAAGAAGTTCTAGGGGAGAGAAGGGATCGTCTTCTTCAGGGAAGAAGAAAAAAACTGTAAGAGGGAATGATAGTGTAGTTAATGAAAATTTTCCAAATGAAATGTGTCAATCTGTGTTTGGTAAACTAGTCACGAAAGCTGGCATGATACTCACATCTGGACAAACAGAAAATAAAATTAAATTAGACCAGACTATTTTTCAAAAACATTTAGCTAATGCAATCAAGAGGCACCAAAATTACCCTCAGATTATTGATGAATTTATTGAAAGTTTGGTCTCTTATCTTGAAGAACCAGAAAGGTTTTGTCTTTCTTTGTTACCTACATTGACTGCTGAAGACTGTGAAGAAAGTACACGAGGACCTACACAAGACAGTTTAATGAGGTTACTGCTTGGTATTGACACACTGCAGCCAGCAATTGCCAATACTTTGTTAGAAAAGATTCCTGAATTTTCTGAAGATAATAAAAGGGTTTCCAATTATGATGTACCAAGATTAGTTATGAGTCAGTTTAAATGGTTGGACAGGATTGTAAAGCCAAAGGAATTAAATCAGAAAATGTTGGAGGTGATCAGTATTTCAAGTGTTGATATTCAGAGAGAAGTTATCACTTGTATTCCAGAAATTATGGATGACAATGAACATGTTGAAATTGCTAGAGAGTTAATTGTGTTAATGAGAGAGAACTCACAACTAAGTGTTGCAATACTGGATACTCTGAGTAACCTCAACTTAAAGTCTGAACTTGTTGCTGAGGTTCGTGGATCAGTGATTAACATGTTATCATCAACAGATATGGATGACCTGCCAGTGGTTGTAAAGTTTATTTTACAGTCTGTTTCAGACAGAGAGGCATTTGAGGCAATCAGTGAACTGCGTAACAACTTAGAATTTAGTTGTTCACTCATTCCTGCAGCAACTTCAACTCCATTTAACAACAGAAAAAGTGTTGCAGCGAACAAATCAAAAGATGGCGTGCTGTTAACTTTGGATGCTATAAAATCTAGCATCAGGTTCCGAAAATCGATTGCTGATGGCTGGATTAAGTCTTTTTTATTCATTCTCCAGGTGATAGACTTATTTGTGATTCTGATCTTGTATACTGTGACAAGCAAGAGGAAGATTATGGAGAGTTTATTACGAAGTAAAGTACGCAGTGGATATTTTGCTGAAGATGTTTTAAACATGGCTTTTAATTCATACGGACAGGTTTTGCGGGAATATTTTGAAAGTCTGTTGGTATTGTCAGAAGTTCTTCTCCGTTCGCCTGATCCAATTGTTTCATCATATGCTCAGAAAATATACACACAAGCATTTCTCACCTTTGATCTTTACTGCAAGCAAGAGGTTGTTGGCGCTCTTGTAACTCATGTTGGCAGTGGTTTTCCTAATGAAGCGGACTCTTCACTTGATGTTTTAAGATGCTTGGTAGAAAACCATCCTACAGATATGTCTTCCTTTGCAATTTTTCTTAAAGGAATACTGGATTACTTGGATAATCTAAGTATTGGTCAAATTCGTAAATTGTTTGCCATGTTAAGTACTTTGGCGTTTCACAACAACGACGGCAGCATGATACAGGATGATATACATATGTTGATTAGAAAACAACTTTCTAGTAATTCTGTAAAATATAAACGAATTGGTATTATTGGAGCTATCATGATTGTTCGTAGCATGGCTCATTGCAGCACTGAGGAAGAAGCCGCTAAGGAATCTAAAAATTCACAAGCAATGGTGAAAGAAAAACATAAACAAGTTGTCAATCTTCTCGACATGGTTCGGAACAGTATTAGTCATGTACCTGAAGCAGCTGCCTTGTTTTATGATGAGTTGGCCAATGTAATTGATAGGAAAGAGTTAGACTCTAACACGGAGTCGTGGATAAGTGAAACAGTTGTTGGTGATTTTCAAGATGATTTTCTTATTGACTTAGAAACTGGGTTACCCAGTGCTGGAATGCCTGTCGATTTTATGTGGGCTTTGGATGACGCTGAAGAAGGATGCATTGCTCTGAATTTAGTTCCTCTGTTAATGAAAAGTTCTGAGAAAGTTACTGGAAAATCGTCAAGGTATAATTCTCGAAATGTGAATCCAATTTGTTTAGCACCTCATTTTCGATTAGTGAGGATTTGTGAACAGAGCGAAAATAATGGAGACCTGGAAGGCATTGATGCTTTGTTAGGTTGTCCAGTTGTTATGTTTAAAGTGGACGAAATTCTGGAAACGTTTGATAAACTTAGTGTTCCAGACAGAGAATTAGTCTGCTGTTCATTGTTCTATTGTTTGAACTGGTTCAGAGAATTGATCAATGCCTTTTCAACTGAACGTGATGCCGAAATGAAAGGAAAAACGTTAAGCAGAATTCAAGGAATCACAACTTTACAAAACTGGTTGGAAAAGTGTTTAAGCGCTACTCCTTCGTTTACACCTCCGCTCGTTCATTTTGATACTGAAAAAAATTCTAAGACATCTTCTTCGTTAAAGACCAATGCAAGTGTGAAAAGAACACGGAAAGGAAATACAAAAAATAAAACCAAGGATGTTGATAAATCATTGGACGAGGAGATCGACAAAGAAAATGAGAGCAAGGAGGAAACATTTTCTGGAGAAAAAAGAAAAGACAAAAATTCATTTACGATCTTGGCATCTTCGAAGTATCGTGCTTGCTTTAGAGAATTGGATTTGAACGTTTTTGAGGTTTTAAAATGCGGTTTGGTTTCCAAGGCTGTTTTAGATTCTAATATGAACACTGAGATGAAAGTCATTCTTCAACTGCAAGCTCCGGAGCTGTATTTTTTGCTTGATGATCTTTCAAAGAAATTAGAATATTCTCTTTCATCTTCAGCAAAGACGACTTTCGCTAAGTTACATCAGGACAAACAAGTTGGTTTCTCTCACCTGGCGAGCAAAAGTGCAGTCGACATTATAATCTATGTTCTTGGTCTCTTACCAAATATCTGTCAACATTTGGAAGCCACTAGTGTATTTTTCCAGGATCTGACAGAGGCAAACGATGGTGTTGTTGATGGTCCAGGAACGAATACGGAAGAAGCCAAATTAATGGCGTCGTGTTTTGAACGTTTGTTTTCCTGTTTAGTTCAATTCTTTTCTTGGTCTGGTTTTAGCGTCACTAGCAACAAGTCTCATCTTAAAGCTGCTTTCGTTGTCTTGGGATCCAGAATAAAGCTTTCCAAAAAGTCGCAGCTAGGATTTCAGGAACTTGTGTGTCAAGCGTTTCGTTATTTTGAACAATTTTCTGGCACTGTTCCTTCGATTGGTACTGCGGTAACATTGGTCAAACTATTAATGGCATTGAAAAATAAGTCAGATAAACACGAGGTCATGTGTTCAGTATCTACCGCATGTGGCGATTTCTTAAAGCAAGAATGGTTTCAGGCAGACGGCCAAAGAGAACAAGGATCAAAATATAATGAACACTTGCAATATTTACTCAAACACCATATTCTGTGCGCTGAAGATCCTTTGACAGCAATCGAAGCTATTTCAACGGGAGCTGTGACTCAACTATTAGAGGAGAGTGATCGACCAATGACGTCAGCATTGCCAACTTTAACCAAGTCATCGTTCCCAGCTTATTATAAAACATTACTCGATGGTCTGGTGAGTTACTTCAAGAGTTCTCAATCGACACCAGTGAAACGTGTAGACTCAATTGAGATCAAAAGAGAAAGACTTGTTCAAATCAATGTTGCTGTTAGATTGTTTCATATTTTAGTCAATCTTGTCAAGGCATTTGAACATAGAACAGTTATCGGAGCAGCTCTTAAGTATGGTCGTCTATTTGTGGAAACGTTTGTGAGTCTGGGAATGCCAGTTCTCGACGAAATGCTTCGTACCAGCAAGGATGATATTCATGGTTTATTAAAAAGTTTTCAACAAAGTACCAGAAGTTTGCAGCACTTTTGTGGACATTCCAAGGTAGCCAAAGATATATCCTTAACAAATCACGTTCCAGGATTAAAGAAATCTTTAGAGACCTTTGTATTTCGAGTAAAGGCCATGCTTGCCGTCAACCAATGTCACGAAGCGTTCTGGATAGGGAATTTAAAAAATCGCGATATTCAAGGACAAGAAATTATTTCTCAACAGTCAAGTCGTGGTGATCAGGACGAAGAAGAAGAGGATGAAGAAGAGGAGGAAGAGGAAAATAAGGAAGAACAAAATAGTAACGATGACGAAGCCAGTCTTATAAGCTGTGCGACACAAGTTGTTCGAACCATAAGTGAACAACTTGTTGACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGGGCAGCGCAACATTGTTCACGGCGAGCAGCACAACCTTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCGCAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTTCACGGCGAGCAGCACAACATTGTGCTGATGGAGTTGACGAAGAAGATGAATCCTGTAGCGAGAGCTTTTAGGAAAAGGATTGTGATTATGCGAGACGCCTTGGGGAGAAACGTAGTGACCGCAAGGTTATCAAGAGATGATCACCAAAGTGTCTCAAGTCCTGACAAACAGCAGACATTAGCCAATGGTCTTTGTATGTTTCCCCTTCGTTTAGACAACAACCTACACTATGCCTTGAAGACTATGCTGTAA

Transcript

Ppa0G171760

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68Y81	Fanconi anemia group D2 protein OS=Gallus gallus OX=9031 GN=FANCD2 PE=1 SV=1
Q9BXW9	Fanconi anemia group D2 protein OS=Homo sapiens OX=9606 GN=FANCD2 PE=1 SV=2
Q6IV68	Fanconi anemia group D2 protein homolog OS=Rattus norvegicus OX=10116 GN=Fancd2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003063 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14631 all species →	FancD2	Fanconi anaemia protein FancD2 nuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029448 all species →	Family	Fanconi anaemia protein FANCD2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32086 all species →	FANCONI ANEMIA GROUP D2 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0000793 all species →	Cellular Component	condensed chromosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0036297 all species →	Biological Process	interstrand cross-link repair	Interproscan
GO:0070182 all species →	Molecular Function	DNA polymerase binding	Interproscan
GO:1990918 all species →	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10891	FANCD2; fanconi anemia group D2 protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.