Gene detail

Detailed information of Ppa0G178470 in Paragorgia papillata

Genomic Location: Contig00265:2870352...2927715
NR annotation: XP_028396205.1, daple-like protein [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G178470

ATGGATTTGGAAGTTAACACTCAATTCCTTGAAAGTCCACTTGTGCTATGGATCCGCACATTTGCCGGTGCCGCTGCGGCCGACTTGACCGATTTAGTCGATGGACTTTTACTCAACAAGATTATGACTGAAATCGACCCGACTTTCTTCGGGATGTCTTTCGTTCACTCGAGTGTGTACGGCGACATTAACCTGCGTGTTCACAATCTTGAACACTTGTTGCGAAGCTTGAAGAACTTCTACCAGGAAAAGTTGCAGCAAGTGATTGTGTTGAACCCTCCAAATATATTTGCTATTGCTAATGAGCCTGAAAGTGATGGCAGTCTTCAAGAATTGAATAAAATCTTCTTGTTAATTCTTGGATGTGCTGTACAGTGTGAGAGAAAGGAATTCTTTATCGAAAAGATTACTTCAATGAAAGAAAGTATACAACAGGAATTGGTTTTGCGCATTAAAGAGATTACAGAGAATTGCGATACAGTTTTTGCTTTTCAACCAAATGAAATTGCGGCTTTTTCTCACGAGGAACTGCTTTCATACTGTGAAGTTATGTACGACCAGATGATCAAACTGGTGCATCAAAGAGATTTTAATGCTGAGGAAATACATCGAGTCTTGGTCGATGGAATTTATCCAACAAAGGAAATGAACGGCAATATTCGACGCATCAGTTCACCTCCTCTTAGTCCAACCAACCCGGATATGGTTCTCGCAGAAAAAGCTAAATTTAGACAAATGGCCGAGGAGCTAGACGAAAAAAATTTAATGATCCAAGAGTTGAAGGACGAAATAGAATCGAATAAGTTAATAACTGAAAGGCTTCTTCAAGAGAACCAGAATTTAACGGAGACGTCTCGGTGGGTGAACGCCTACCGGGATCAGCTCGATGTACTGAAAATCAAAGCTGAGAGAGCTGGCAAGTTGGAGAGCGACGTTTTTAAATATAAGGAAAAGCTTCATGAAATGGACACATTAAGGAAAAGAACAGAGGAACTGGAAGAACAGAATGAGATTTTGTACAATACCAGAGTGGTGTTGGTAAAGCAAGTTGATACATTAACTACTAAAGCTGAGAGACTAGGAGAAACAGAACGAGAAGTGGTAAGACTAAAAAAGAATATTAAAGCTCTTACTGAGGAAAGAATTGTTTTAGAAACGAAACATCAGGACGTGCTTGACGAAAACGCTAGACTATCACTGGATGCTCAAAACAGTCTTTCTGAAGTATCAAGTTTAAGTTCAGAGCTCGACATGTTCAAAGACAAAGAAGAAACTGGTAAGACATCTTTGCTTGCTTTTTCTACATGGACATGTTTAGCGAACGAATACAATCAGATTTCGTCAACTAAACTACTGCGATTGGAACACGAGAATCATCGCTTGAAGGTGCTGATTGGAGAATTGACACAACACAAGGCTGTCGCTGTACCTCAGACCGTAGTAGCAGAAAATGAAGTCGAGAATGTAACTTACGAACAAACCACGAGCGGCGATGAGATTGCGGAAGATCCCGAAGTTGTAAAGAGCTTAACGAGCGTAACGAAAGCTTTAAGTAGCAAAGAAACTGAGCTCACAACAATACAAGAAAAGTTAAAGAAAAAAGAAGAGCATGCCAACATGGTTTCTGAGTCTCTTTCTGTCAAAGAACAAGAAAATAGCGAACTTCAAGACAGAATACAACAAGTGATGAACCAGAAAAGACGAACTGATCAGCTTATTCACAGGAAGAACGAAGATGTTGCGGAATTGGAGAGAAGACTTGAAGAGGTCGTAGCCGACCGACAGAAATCCGAAGAAAACGTACGAAAGAAATCACGAGAAATAAACGAGCTGACCAACAGATTTCAAAAGAAATCCACAAAGAAGATGAACACATCAACGAATCATAACAGTGCCGACATGATTATTGAAAGTTGTTGGAATGCGTTCGTAGTTCACTCGCCACCTCCTTCTTACGTTCTCAACAGTATACTAGCTTGCGTTCTGAACGCATCTCTTGGCTTCATTGGAACCAGTCTGAATTCGCTTGTCCTCTTTATTTTCTGGAAATCACAGAAACTAAGAAAGAGAGTATCCGGTATGATGATCATGGTTTTGTCTTCAAATGATCTTGCAGTGGTAACAATTATTCCTACAATGTTCTTGGTCCACTTAATTACTAACATTATAGGAATACCAAACTGTTTGTACATCAAGTGTGGTGAGTTCGCAGCGTTTGTGTTGTTGGAAATTTCCGTTATGACTCTTACCGTCATGAATATCGATAGATACTTAGCGATTATTTATCCTGTGTTTCATCATGTAGAAATGACAAAGGAAAAATGCGTTTTACTTTTGAGTTTTCTTTGGCTTATTGTCATAGCTGCCTCAACAGTTCGTTTTATTTCATTGTTTGTTTACAACGTCATTTTGTCAATAATTCTCGTCGCCGTCGTGTGTACAACGCTGTTTACATATATGTCAATTTTCTACGTTGCAAGAAAGAGACTAAAATCAACAGACAACGACGCAAGCAATTGCGAAACATCCCACAAGTTTGCAACTTTCTTACGTGAATTAAAATTGGCAAAAGTGTATCTCTTTATCGTTTTCATGTGTTTTCTTTGTTATGTACCGGCAGCTATTTTTAGTACATTATGGATTGTATTGAAAGGCAAAGAGCAAACACGAAATGTCCTTATCTATTTCTATCCATGGTCTGGTTTAGTACTTTCGGTGAATTCCACTTTGAACTGTTTGGTCTTTTTCTGGTCAAATCGAGACCTCAGAAAGGAAGCTTCTAAAATTCTCAGGAATTTTACCACTACAATAAATTGCGCAAAACTGCACACAGTAATAAATAATAATTAA

Transcript

Ppa0G178470

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P85120	Protein Daple OS=Xenopus laevis OX=8355 GN=ccdc88c PE=1 SV=1
A0A2R8QCI3	Protein Daple OS=Danio rerio OX=7955 GN=ccdc88c PE=2 SV=1
Q9P219	Protein Daple OS=Homo sapiens OX=9606 GN=CCDC88C PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002042 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947 all species →	HOOK PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G178470.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.