Gene detail

Detailed information of Ppa0G181540 in Paragorgia papillata

Genomic Location: Contig00268:1199204...1208481
NR annotation: CAB4008104.1, Selenium-binding 1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCH7	Methanethiol oxidase OS=Xenopus laevis OX=8355 GN=selenbp1-b PE=2 SV=1
Q52KZ7	Methanethiol oxidase OS=Xenopus laevis OX=8355 GN=selenbp1-a PE=2 SV=1
Q569D5	Methanethiol oxidase OS=Xenopus tropicalis OX=8364 GN=selenbp1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05694 all species →	SBP56	56kDa selenium binding protein (SBP56)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR008826 all species →	Family	Selenium-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23300 all species →	METHANETHIOL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008430 all species →	Molecular Function	selenium binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17285	SELENBP1; methanethiol oxidase	EC:1.8.3.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.