Gene detail

Detailed information of Ppa0G183330 in Paragorgia papillata

Genomic Location: Contig00274:425992...452641
NR annotation: XP_028398082.1, IQ motif and SEC7 domain-containing protein 2-like isoform X1 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G183330

ATGAATCAAGTGTCGTTGGTGGAGCAGTTGAAGGAAGTTGTCAAGGCTCAGAATTCGTCGCTTCGGCATAAAGACGCCGAAGTTAAGAAGCTCCAAGCGGAGAATACCAAGCTTATTGCTCGTCTGAAAGGACTCGAGGTTGAAAACGATGGCTTAAAGGCTCAATTGGACAAACACAGAGAAACAAATCACAAAATATCGGCGAGAACCGAACAGAATGGCGAGACGTTATTACGTCCGAGCACTTTAAATGTTTCTGAGCCATCAGCTGATTCTTCTGTTGGTGAATTGTATAAGACTGCTTTGACTAGTCCACCACGATCACCAAGTCTAACTTCATCTCTCACTCTTGATGCCAAACACCAGATTACAATCACACTCTCAAGCACTCCAGATCCTGCATCCAGCAAGCCTTTCCCCACTATTAAACACCATATTTCTCCTAAAAAAACTCTTACCAGATCCGAAAGCAGGAAAGCGAAGCGGAAATCAATTTATGAACTTTCTCCAGACATCTCTGACAAGCATGTTCAGATCTTGGAAAATTGTTATGGTGGAAAAATAAAGGCAAGTAATGCTGCTAAAGTAATTCAGCAGCACTATCGAAGTTGGGCTATGAAAAAAGCCTACTTTAGACTAAGGACTCAGTCGGAGGTACGGCGGACCTCTGTGAAGGGCCGCAGGAACACCAGATGTTCTATACATAGTCCTACCAGTTCGGAAGAGCTGAGTCCCATTTCTACAATTCCAGTTCCCCTCAATTTTAGTCTTGATGGATCCGATGTTGTTGATAACAGTACTTGTAGTCCTACTACCTCGAGGACAGCGCCATCAGACGCAGAAACAGTGCTTCGAAGGCCTTCAATCAAAGATGAATTCAAAGCCATTCAAACTGATTTAAATATTGACGAGAACTTTCAACCTGTTGGCATTCATCATAATACAAGCCAAAGTGGGCTATCTGTTCAACATATGAGTGAAGACATATCAAGCATTGAAATTAGCAAGAATTTATTAAATAATAGTATTGGACAACAGATTATTATCGATGAGGTCTTTCAGCAGATATTGTCACCGAGAAAAGACAGTTTTTCTCGTGCAGGAAGAAAGGATAGTTTTTCTCGTGGGGGAAGAAAGGATAGTTTTAGGTCCCTTAAAGAAGAAAAAGCCAATGTTCCTGTCGTAGAATCTACTCCTAAACTCGTTTCTGTTGTGGAGGTCGTTAAAAAACATGAAGTTGAAGAGAAAATTCAACCAGCTATCAATGAAGTAGTGTACGAAGAGAAACCAGAAGATAAAGGAAAGTTGGATTCAAATCAAAATGTGTCAACGCAAGACCTTAACTGTCAAGCGCGGAATGGTTCCGAGATCTTTGATGCTGTTGATGGTCATTCATACAGTTGGCCGACATTAGACCAACTACATGGAGATGACTCAACTAGTATGGGAAGCAACAGCTTGTCACCATCTTCAAGTATTATACAGAATTTCTACGAGGATAAAGACAAGGATTGTCGCATTGGTATCAATTATTTCAACAGAAAACCGAAAAAGGGCATTAGTTATCTTATTGATACAGGAGTACTAGAAGAGGATCCAGAAAGCATATGTAAGTTTCTACGCGAGGAACCAGGAATTAGCAAGCAGAAGATTGGTGAATATCTTGGTAATCTCCGCAATCCCTTGAGCATGGAGGTCTTACAATCATTTGTAAGATCAATTGACATTGAAGGAAAACAAATTGATGAAGCTTTGAGATTTTTCCAGACCTCTTTTCGCATGCCGGGAGAAGCACAAAAGATTGAAAGATTAGTTGAGGAATTTTCTGCTGCCTATGTTGAAGCCAATCCTGGAATTGTGTCAGATAATCGAGATACTATATTAATTCTTTCTTTTGCTATCATCATGCTGAACACAGATCTTCACAGCCCAAATGTCAAACGAAAAATGTCAAAACAAGAATTTACTCAGAACTTAAGAGGCACGGATAATGGCGGAGATCTACCACCAGAAGTTCTATCAGATATTTATGACCGTGTGCAAAAGAAACAATTTAAAACTGGACCTGACAATCTGGATGCAGTCATAAAATATGAAAAACAAATTAGTGGAAAACTTCCATGGACAACTTTAGCTCTACCACATCGACAGCTGAGGCAGGTGACATCACTCTATGAAATACAGGGTGGAAGGAGGAAAGAGAAATTCCATCACAGAGTTGTGTTTCTTTTCAACGACATGATTGTGGTTACAAAAGAAAGGGGTCAAGCTGGACCAAAGGGAATTCACTTTTATAGCTACAAGTCCTCACATACGCTTTGCGATATAAAGTTCTCACTTTTTAACAACAGCTACTATAAATATGGTATTCGACTTCTTAACAAGTCTAACAGTCAGGTTCTCATCTCATTTCATGCCAAAACTGAAGACATACGAAAGACGTTTTACACGGAGCTTAGAGATTGTATTGAAGAGACTGGTATTATGGAGAGTGAGCGAATTAATTCTGAGAAGACGCGTCAGCTATCAGTTTTGGGCTATGGTAAAAGAGAACTTAAGGATACCATGTCGTTGACTTTACCACGCTCTAAAACTCAAAAAAGTAAACCGGCTCCTGATTCTCTTAGCCTTCTGAGTGAACCGACTCCTCAATGTGAAAGTGAACTGACTGGAAATAAACTCTTATCAAGTTCTTTACAAGATCTAACGCAGGCAGACGGTGCCTACTATGAAGAGACACTACAGAAGAGCAGCAGTGTGACGTCCATTGATGATTATGTCGGGAGCGAGTTTACTGACAGCACTCCTGAATTGTCCCTAAGCACCTCCCTTCAGCACCTGCCAAAAAAATTTGGACTTTTCAGCTCGAAAAGAGTAAAGAATCCACCGCAGCGAAAAGCGACCAAATCAATTGGCAGTTTAGAAGATATTAAACTCACGCAGAAATCTGTTACAAACTCAAACGGAGGACGAAGAAAATCTGAATTTTTTGTGAAATCTCCCATAACAACATGA

Transcript

Ppa0G183330

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R0S2	IQ motif and SEC7 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Iqsec1 PE=1 SV=2
A0A0G2JUG7	IQ motif and SEC7 domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Iqsec1 PE=1 SV=1
Q6DN90	IQ motif and SEC7 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IQSEC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16453 all species →	IQ_SEC7_PH	PH domain	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR033742 all species →	Domain	IQ motif and SEC7 domain-containing protein, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12495	IQSEC; IQ motif and SEC7 domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.