Detailed information of Ppa0G183470 in Paragorgia papillata

Genomic Location: Contig00274:617995...624452
NR annotation: XP_028417708.1, pre-mRNA-splicing factor 18-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5EAV6Pre-mRNA-splicing factor 18 OS=Xenopus laevis OX=8355 GN=prpf18 PE=2 SV=1
Q6GMH0Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 PE=2 SV=1
Q2HJ41Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006751 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02840
all species →		Prp18Prp18 domainFamilyInterproscan
PF08799
all species →		PRP4pre-mRNA processing factor 4 (PRP4) likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004098
all species →		DomainPrp18Interproscan
IPR039979
all species →		FamilyPre-mRNA-splicing factor 18Interproscan
IPR036285
all species →		Homologous_superfamilyPRP4-like superfamilyInterproscan
IPR014906
all species →		DomainPre-mRNA processing factor 4 (PRP4)-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13007
all species →		PRE-MRNA SPLICING FACTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0008380
all species →		Biological ProcessRNA splicingInterproscan
GO:0000350
all species →		Biological Processgeneration of catalytic spliceosome for second transesterification stepInterproscan
GO:0005682
all species →		Cellular ComponentU5 snRNPInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071021
all species →		Cellular ComponentU2-type post-spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12817PRPF18, PRP18; pre-mRNA-splicing factor 18-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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