Gene detail

Detailed information of Ppa0G187520 in Paragorgia papillata

Genomic Location: Contig00287:950912...985085
NR annotation: XP_028397742.1, protein SDA1 homolog isoform X1 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G187520

ATGAGTCGTAGGAACAGAAATCAACTTCCTAATAATCTTCCACAGCTTCAAAATGTTATTAAAAGAGATCCCGAATCATACAAAGAAGAATTTCTCCAACAGTATAGACACTATCAGTCCAATCTAGAGATCTTCAAAATGAATCCATCTCTTGCTAATGTAGTTTTTCAAGATCTGGTAATGTTTCTTAGTCAGGTTTCTTACTGTTTCCCAAGTGAGCTAGAAGAATTTCCTCAAGAATTAAAAGATATTTTACAACGACACTATCTTGTGATGAATCCTGAACTAAGAATGGTTCTTTGCAGAAGTTTGATTTTACTACGAAATAAGGGACTTTTATCCCCAACGAGTCTTTTGGAGCTGTTTTTCTTGCTGTTTCGCTGTAAAGACAAACTTCTTCGTAAGACTCTGTACACTCACATTGTCACAGATATTCGTAATATTAACGCCAAACATAAAAACAACAAAGTAAATAATACACTGCAAAATTTTATGTATACGATGTTGAAAGATAGCAATTTGTTAGCAGCTAAAAAATCATTAGACGTAATGATTGAATTGTACAAGAAAAATATCTGGAAAGATGCCAAGACTGTTAACGTTATAGCATCTGCTTGTCTGTCTGATTTTAATAAGATTTCTGTGACTGCATTAAAGTTCTTGCTTGATAAAGATGAAGATGAAGCTGAATCAGATACCGATAGTGAGACCGAAGGTCCAACGGTAAAGCAGCTTTTACTTGCCAGTCGAGTGTGCAAAAAAACGAAAAAAAGGGGAAACAAATTAAAGAAGACACTATCAAATATGAAGAAAAAGAAGAAAAAGGATTTAAAATCTGCCACCTTTTCAGCATTGTTTCTAATAAATGACCCGCAAGGGTTTTCTGAAAAACTTTTCAAAAAGTTAGAGTCGTCTACAGAAAGATTTGAAGTTCGTCTTATGATGATGGATGTCTTAGCTCGGTTGGTTGGCGTTCATCAGTTATTTATTTTCAACTTTTATCCTTTTCTTCAAAAATATCTTCAGCCTCACCAAAAAGAAGTTACAAAGCTGTTGACATTTTATGCCCAAGCTTCGCACGAGCTTGTTCCCTCTGAGATTGTAGAGCCAGGACTTAAAACAATTGTTAACAATTTTGTGACGGAAAGAAACTCAAACGAAGTTATCGCTGTTGGTATCAATGCCGTGAAAGAGATCTGCTGTCGATGTCCATTAGTGATGTCTGAAGAACTTCTGAGGGACTTGGCCGAGTATAAGAAGTCCAAAAATAAGAGTGTCTTTAATGCATCGAGATCTCTGATTCAGCTGTTTCGTAATCTCAATCCAACACTTCTTCACAAAAAGGATAGGGGTAGAATGACTAAAGAAGAAAGAACTTCACGTCCTAATGAATATGGTGAATTGTCCTCGAAAGACTACGTTCCAGGTGCCGAGTTCTTAGATGACAATGCAGAAATTGGAGAAATCACAGAAGAAAGTAATTATTCTTATATTTTTTTAGTGCTGAATGCGGATGAAGATAGTGATAGTGAGGTGGAATGGAGTGACGCCATTGATACAGATGATGAAGAAAATGATTTGGAAGGTGAACATGATGATGAATTGGACCAAAATGATCATCCTGAACAAGAGGAGAAATCTGACAATCATTCTATGGCTACGGAGGAGAAAGAAAGCGAAGAAAACTTGGCGACTAAAGCTTCAAGGATAAGTCAAACAAAAATATTTACAAACGAAGATTTCAAGAAAATGAAACTAACAAAGGTGGTCAATGAAGTTAACCCAAAAGCAGGAAAGAAAAGAAAGAATTATTTTAATAACCCCGAGGAACTATCTGAACGGAAAGAACTACTCTCAGTTGATGACATTGAACAAATTTATGGCAAGAAACGAAAGAGTGATAAAGACGAAAGGATAGCATCAGCTAAGTCTGGTAGAGGTGATGTGAAACGCACGTTCCAAAAGAATAGATGCAATGAATTTACAAGCACAACAAATAAGGAGAAAAGGAAAAATAAAGCATTTATGATGGTGAAGCATAAAGTAAAAGGAAAAACGAAACGTTCATTTCGAGAGAAACAGATTGCATTGCGAGACTCTCTTATTAAGAAAAAAAGAAAGACTAAGTTTTAA

Transcript

Ppa0G187520

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S6A5	Protein SDA1 homolog OS=Nematostella vectensis OX=45351 GN=sdad1 PE=3 SV=1
A5D7C2	Protein SDA1 homolog OS=Bos taurus OX=9913 GN=SDAD1 PE=2 SV=1
Q9NVU7	Protein SDA1 homolog OS=Homo sapiens OX=9606 GN=SDAD1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004569 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21638 all species →	SDA1_C	SDA1, C-terminal	Domain	Interproscan
PF08158 all species →	SDA1_HEAT	SDA1, HEAT repeat	Repeat	Interproscan
PF05285 all species →	SDA1_dom	SDA1, conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048292 all species →	Domain	SDA1, C-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR012977 all species →	Domain	SDA1, N-terminal	Interproscan
IPR027312 all species →	Family	Sda1	Interproscan
IPR007949 all species →	Domain	SDA1, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12730 all species →	HSDA/SDA1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14856	SDA1, SDAD1; protein SDA1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.