Detailed information of Ppa0G189820 in Paragorgia papillata

Genomic Location: Contig00293:543077...543865
NR annotation: CAB4008381.1, ATP-dependent RNA helicase DEAH11, chloroplastic-like, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q6DH94Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1
Q80TT8Cullin-9 OS=Mus musculus OX=10090 GN=Cul9 PE=1 SV=3
A4IIY1Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis OX=8364 GN=rnf144a PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044066DomainTRIAD supradomainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR031127FamilyE3 ubiquitin ligase RBR familyInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR002867DomainIBR domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11685RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031624Molecular Functionubiquitin conjugating enzyme bindingInterproscan
GO:0032436Biological Processpositive regulation of proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

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