Gene detail

Detailed information of Ppa0G194100 in Paragorgia papillata

Genomic Location: Contig00295:3246888...3302891
NR annotation: CAB3981774.1, Hypothetical predicted protein [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q53T94	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Homo sapiens OX=9606 GN=TAF1B PE=1 SV=1
Q4R657	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Macaca fascicularis OX=9541 GN=TAF1B PE=2 SV=1
Q5ZJR9	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Gallus gallus OX=9031 GN=TAF1B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20645 all species →	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan
PF20644 all species →	Rrn7_cyclin_N	Rrn7/TAF1B, N-terminal cyclin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048538 all species →	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan
IPR033599 all species →	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan
IPR048540 all species →	Domain	Rrn7/TAF1B, N-terminal cyclin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576 all species →	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001164 all species →	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668 all species →	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360 all species →	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790 all species →	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860 all species →	Cellular Component	RNA polymerase I core factor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G194100.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.