Gene detail

Detailed information of Ppa0G197570 in Paragorgia papillata

Genomic Location: Contig00298:1093791...1118987
NR annotation: CAB3985012.1, WD repeat-containing and planar cell polarity effector fritz homolog [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G197570

ATGGCCACTACATTATTGGCTCACTTGCATGTCTGGTCACTGCAGACTGCAACTGAAAGATTGGATGATATTGGTTTGCATACCTATCATGAAAAAGCACCAGGTCGCAGAATATCATGGACAGTGAAAAACAAACGCCCAGAAAAGTTAAAAGATTGTTTGAATGAAGTTGAGGAATTGCTTCAGTCTCACCGAATTGTTCAAGTAAAGTGGAGAAATGCAAGATTTGTCCAGGTTCTTTTAAGTAATGCAACACTAATTTCATTAACTGTGGCAAAGAATTCAGGTGATCTTGAAAAAGTTTTTATTGACAAATCACTTTGTGGGAAAGTCACAGAAAAACTGCACACAGGTATCTGGACCGAGACATTCATGTTGCTTTCATTTTGTGACAAATCTAAGATCTGCTGTATTCACTTCACCAAGAAACTTTCCAGCCATTTTAGAAAGCTTGAGAAATTAGTTGCATTGGAACCGAAGATTACGTATCTAGATCTACCTGGTCATGCTGGACGAAGATTAAATCGATACTTAACTGTGAACACAAGACAGGATATGGTTGGAATTTGGTGGTCAGCAGCAAGTGAGGAAGCATGGCCATGGTCCCCTGTGGCTAGTGATAGAGCAAGAGCTAATATTATTGTGCTTGGTCTGAATGGAGGGAAAGTTGATGTCTTAGGTTATCTACGGACTGAATGTGATCCAATTTACGCATCATTTAGTCGTCAGAACCCACAGCATATTCTTACAATTGAGTTTACTCCAAGGAGTGCTGAAGACAACAGCATTGACAGCTGTATTTATGAATTTGACCAAAATAGTATTACAAGAATTAGTGCTACATCTATTCCTCTGAAAGCTGCCGTTTTATGTCTAGCGTGGAATGAACAAGAAGACAAACTCTTACTTGGATGTAAAGATAAGAGTTTGGTTTTATATGACTGCCACAGACTTTTGACTCAATTCACAAATATATCGTTTATTCCTTCCAAGATTCAGTGGCATCCTGCTGATTCAGTTGCCTTTGTGTTTAGTCTCCATGGAGATATTCAGGTTTTTGACATGGCACTAGCGCCCATTCTTCTTCAACTTGCTGGTGAAAATTCTAAAAATTCACCGATATTTTGCATGTCAGAACACTTCACAGGTATAAAACTTGCACATGCTGAATGGTCATGTGATGTTCCTCTTTACACTGTGACGGATGGCAATGTAGATTGCCATGACAACTTAATTCTTGTGTTTCAAGACAGGGGACTGTTATGTAACTTGAGGATAGAGTTAGGATCAATGACACAAGCCCGTTTAGGGCCACGAGAACTTATTGAAGATATTAACTGGAATAGTGAAGGCAATGTTTGCTTTGCTTGTCTCTCGGCTGTGATGAATTATTTATTGAAATTTCCCTTAACAGACGAAAGAGAAGGCCTTCTGGAAGAAACTCTTGGTTGCTTCTACACACCTTCTAGACCACTAACTGACGTCACAGTTTTACGGTTTCGAGATCCGTTAAGTAGATGGTCTAGACGATTTTTTTATCATTTATTAAGGTACAACAGAGTTCACAAGGCATTTATGTTAGCAGTTGATATAGGAGCTGCTGATCTATTTATGGACATTCATTTTGTAGCAATGGACGCTGGCAATATTGCATTAGCTGAAAATGCCAAAAATAAAGCTCTTGAAATAGACAACGAGCTGTTATCGACAGTAGGATATGAGAAAGCTGAGGAATACAAGGAAGCACCTCACCCCTTGCAGGAAGAAGTGGTTATACCATTACAAGAAGAACACAATAATGTCGACGCACAGCAGCCCGAGGAGGAGATAGTAGACGATCAGAATAGCAATAACGTTTTGATACCAGACCACGCTAACATTACTCAGGATCCTGTAGTCTGGCAACTGGCGAATAACATTGGTAATGCTGCCATCTTGGATCAGTTGCGGGGCAAAATTGCAAACCCGAATGTAAAACTAGCTCTCGGATATGCATTTCTCCCACATGACAACACCAAACATGTAGATTTTCAAGTGATAATGTTTGATAATAGCAAAGATATATAA

Transcript

Ppa0G197570

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95876	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Homo sapiens OX=9606 GN=WDPCP PE=1 SV=2
Q32NR9	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Xenopus laevis OX=8355 GN=wdpcp PE=1 SV=1
Q8C456	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Mus musculus OX=10090 GN=Wdpcp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11768 all species →	Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024511 all species →	Family	WD repeat-containing and planar cell polarity effector protein Fritz	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13667 all species →	HOMOLOC-13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan
GO:0045184 all species →	Biological Process	establishment of protein localization	Interproscan
GO:0097541 all species →	Cellular Component	axonemal basal plate	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22863	WDPCP, CPLANE5; WD repeat-containing and planar cell polarity effector protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.